PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG042700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 367aa MW: 37299.3 Da PI: 9.2857

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG042700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.5	6.2e-38	79	136	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + Pavir.9NG042700.1.p 79 QAPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRP 136 66789**************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.1E-32	81	135	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-26	82	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MIQELLGGAA MDQLKSVNDG NPGSLPLLLH PIVSNPSPTS SSSTSSRSSA QQQRSTSATS 60 SPQGQGQGQG QQQGQGPEQA PLRCPRCNSS NTKFCYYNNY NLTQPRHFCK TCRRYWTKGG 120 ALRNVPIGGG CRKPRPMPTP VAKPAVSCKS MGGAPSLGLG VGLGMGAGPA PWASSQQAAA 180 AQLMALLNSA RGVQGGHGGS NMHRLLGLDT MPNLPLHVLP GGGAPASLWP PAGPRPIPTP 240 PLMDSQIGMG PLGQPDVLSS LGLKLPPPSS PPAASYYSDQ LHAVVSSAAG RPHEYDGPGA 300 TSLPSTTAAT SLPPAASGVS AALCSATVGL DLPPVSLHAP EMQYWAGPAA MSVAWPDLPT 360 PNGAFP*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MIQELLGGAA MDQLKSVNDG NPGSLPLLLH PIVSNPSPTS SSSTSSRSSA QQQRSTSATS  60
SPQGQGQGQG QQQGQGPEQA PLRCPRCNSS NTKFCYYNNY NLTQPRHFCK TCRRYWTKGG  120
ALRNVPIGGG CRKPRPMPTP VAKPAVSCKS MGGAPSLGLG VGLGMGAGPA PWASSQQAAA  180
AQLMALLNSA RGVQGGHGGS NMHRLLGLDT MPNLPLHVLP GGGAPASLWP PAGPRPIPTP  240
PLMDSQIGMG PLGQPDVLSS LGLKLPPPSS PPAASYYSDQ LHAVVSSAAG RPHEYDGPGA  300
TSLPSTTAAT SLPPAASGVS AALCSATVGL DLPPVSLHAP EMQYWAGPAA MSVAWPDLPT  360
PNGAFP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7271	3e-47	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG042700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969749	0.0	EU969749.1 Zea mays clone 335113 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796814.1	1e-175	dof zinc finger protein 4-like
TrEMBL	A0A3L6S3L8	1e-174	A0A3L6S3L8_PANMI; Uncharacterized protein
STRING	Pavir.Ia00348.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-32	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Pavir.9NG042700.1.p