PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG652000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 298aa MW: 31620.7 Da PI: 4.438 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 70 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ +g+W+Ae+rdp+ r r++lg+f tae Aa+a++ a++ l+g Pavir.9KG652000.1.p 70 SRYHGVRRRP-WGKWAAEVRDPV----RgVRVWLGTFATAEAAARAYDDAARDLRG 120 79********.**********63....56************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.37E-15 | 70 | 130 | No hit | No description |
Pfam | PF00847 | 1.5E-12 | 70 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-21 | 70 | 129 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-30 | 71 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-30 | 71 | 130 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.709 | 71 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 72 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 94 | 110 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MCGGAILAEL IPSGGRRGAP AAAAKDDDFE AAFQDFDEGS EEEVVMLTER EAFALGARAS 60 AGARRNRRPS RYHGVRRRPW GKWAAEVRDP VRGVRVWLGT FATAEAAARA YDDAARDLRG 120 AGAKLNFPSS ADTARTRKRR AAAAVAKAST YGADVVGAHA LSAETSDAIS GDSSCGSLPD 180 FSWQGMSATD DGAARPDDDF HVEPDRSVEL GCPSKRTRTE PQEEEVVVVA PAPPAASEGS 240 AALLFDAFMF GDQFSFFDGG AYESLDGLFG SDAVESNQSA VLWTFDDNRL VEDTMCY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 71 | 133 | 14 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.13273 | 1e-135 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG652000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087688 | 8e-62 | BT087688.1 Zea mays full-length cDNA clone ZM_BFb0158A18 mRNA, complete cds. | |||
GenBank | JX469918 | 8e-62 | JX469918.1 Zea mays subsp. mays clone UT3174 AP2-EREBP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795465.1 | 1e-143 | dehydration-responsive element-binding protein 2D-like | ||||
TrEMBL | A0A3L6S880 | 1e-142 | A0A3L6S880_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ib00527.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4371 | 26 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 1e-15 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG652000.1.p |