PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG646700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 323aa MW: 35097.4 Da PI: 4.6131 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.3e-19 | 69 | 121 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ +q+++Le++Fe +++++ +++ ++A+ lgL+ rqV vWFqNrRa++k Pavir.9KG646700.1.p 69 KRRLAVDQVRALERCFETDNKLDPDRKSRIARDLGLQPRQVAVWFQNRRARWK 121 4578899*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 125.6 | 2.2e-40 | 67 | 159 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ +qv++LE++Fe+++kL+p+rK+++ar+LglqprqvavWFqnrRAR+ktk lE+d++aL+++++al+++ ++L++++++L++e Pavir.9KG646700.1.p 67 EKKRRLAVDQVRALERCFETDNKLDPDRKSRIARDLGLQPRQVAVWFQNRRARWKTKTLERDFAALRARHEALRADCDALRRDKDALAAE 156 69**************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 ++e Pavir.9KG646700.1.p 157 IRE 159 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.13E-18 | 61 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.374 | 63 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-19 | 66 | 127 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.01E-16 | 68 | 123 | No hit | No description |
Pfam | PF00046 | 8.7E-17 | 69 | 121 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-20 | 75 | 122 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.4E-5 | 94 | 103 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 98 | 121 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.4E-5 | 103 | 119 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.4E-13 | 123 | 164 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MKRQSKRPAS SHESTEEGEK LAFAEDEALA ARNMEHEEAE PELDDADDDE DELASGRAGR 60 SPGGLGEKKR RLAVDQVRAL ERCFETDNKL DPDRKSRIAR DLGLQPRQVA VWFQNRRARW 120 KTKTLERDFA ALRARHEALR ADCDALRRDK DALAAEIREL RQKLSKPEAA AKLEAAANDA 180 AAEERQATAG ASAAAVCKDG SSDSDSSVVF NDVEASPYSG AAFEQPAFAG FGAPFLDTSA 240 AVTTGCSSLS MFETKWQQAP ACPYDSYKSS GGVYGFTEEW FASSDVIGSG DCAASFFSEE 300 HASSLNFGWC ASSTEAWERA RL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.20182 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG646700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX469925 | 0.0 | JX469925.1 Zea mays subsp. mays clone UT3181 HB-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798128.1 | 1e-173 | homeobox-leucine zipper protein HOX13-like | ||||
Swissprot | Q10QP3 | 1e-105 | HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13 | ||||
TrEMBL | A0A3L6TL26 | 1e-179 | A0A3L6TL26_PANMI; Homeobox-leucine zipper protein HOX13-like | ||||
STRING | Pavir.Ib00562.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4283 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 4e-30 | homeobox protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG646700.1.p |
Publications ? help Back to Top | |||
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