PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG612800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 241aa    MW: 26501.4 Da    PI: 9.0905
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG612800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.91.6e-33138194158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++Il+RRq Rakle+e+kl  ksrkpylheSRh hA++R+Rg+gGrF
  Pavir.9KG612800.1.p 138 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHLHAMKRARGTGGRF 194
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-38136197IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115239.221137197IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.1E-29139194IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-24140162IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860142162IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-24171194IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MLPPHLTENG TIMIQFGHQM PDYNSPATQS TSESHQEVSG MSEGSLNDHN DQSGNHDGYS  60
KSDENKMMSA LSLGNPETAY AHPKTDRSQS FAISYPYADS YYGGAVAAYG QHAIQMHPQL  120
VSMVSSSRVP LPIEPAAEEP IYVNAKQYHA ILRRRQLRAK LEAENKLVKS RKPYLHESRH  180
LHAMKRARGT GGRFLNTKQQ SDSPGGTSDA QRMPANGGLF TKHEHSLPPG DRHYHARGGV  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-24138204267NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.200080.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG612800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792630.11e-173nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBLA0A2S3ITQ81e-172A0A2S3ITQ8_9POAL; Uncharacterized protein
STRINGPavir.Ib00471.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.17e-41nuclear factor Y, subunit A6