PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG589700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 608aa    MW: 65100.5 Da    PI: 8.1224
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG589700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05496521123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          ++C+  +C ++F++k +L +H ++ +
  Pavir.9KG589700.1.p 496 FECNidYCQMTFKTKAELSVHKKNmC 521
                          89*******************99866 PP
2zf-C2H213.40.00024579603123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          ykC+   C+k F+  s+++rH r++
  Pavir.9KG589700.1.p 579 YKCTmpGCNKIFKFVSDFTRHRRRC 603
                          99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035517496518IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.219519548IPR007087Zinc finger, C2H2
SMARTSM003553.4519543IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280521543IPR007087Zinc finger, C2H2
SuperFamilySSF576672.21E-14530583No hitNo description
Gene3DG3DSA:3.30.160.601.2E-10536569IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0017549573IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.676549578IPR007087Zinc finger, C2H2
PROSITE patternPS000280551573IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-9570601IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.32E-5575602No hitNo description
SMARTSM0035512579601IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995579607IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MRIRRYAARL LSSPSLSPTA NAAPSSPPPP PAASWLHAAA EDCCAFCELS RPAPQEGSDA  60
IKHKGHIASR VPESDVGGDE RVRQAQQPPA PEVKKCKADH GFNVNKTSVE LQAPRAASGV  120
SEAVVKPEVA GGATLVNEAD AEPAAKPGNF IVDAAAIGQE VNCRFSLVND ATKPEVTGGD  180
SLLNGSTTGL EVLEDAPLAN EAAHDPEVTE KVSPESKVAT VPEVTSVAAE VTGVPSRMNK  240
SGIILEVIRR TSSGKAVNDP GVATTMLRTG SLSTEGADRP KVTGVASFMQ ETTKLESVGE  300
DYVASKAAAE PEDSGRVSSN VDDTATLDKP QLPSCNPNIG NVQLRNAGET VASAMQPSGC  360
DAAKVHSFVN STSNGPVGAK GPTVEGGLLN DGFVKPSVSC AYDIVARSIG TSGRSDVICY  420
ARRRGKRKLE LLEVKTENIE LEDGVICEEE TLGRTGRCEG VLSTAGSVDV KLADIKKELM  480
DNSAASKVKK TKRNRFECNI DYCQMTFKTK AELSVHKKNM CTVKSCSRHF RSHRYLRRHQ  540
SVHNDDMPYK CPWDGCGMAF KWSWDRAEHF KVHAGVKPYK CTMPGCNKIF KFVSDFTRHR  600
RRCKPQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A8e-4049660223129Lysine-specific demethylase REF6
6a58_A8e-4049660223129Lysine-specific demethylase REF6
6a59_A8e-4049660223129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421427RRRGKRK
2421428RRRGKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.220380.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG589700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792345.10.0uncharacterized protein LOC112873563
TrEMBLA0A3L6SAH40.0A0A3L6SAH4_PANMI; Zinc finger protein GLI1-like isoform X2
STRINGPavir.J38242.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.12e-40relative of early flowering 6