PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG583700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 167aa MW: 18028.9 Da PI: 11.1939

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG583700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.1	2.8e-11	21	65	3	47
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 e +r +r+ +NR++Ar+sR ++++ ++ L+ +++ L eN+a++ Pavir.9KG583700.1.p 21 EERRRKRMTSNRLSARKSRMKRQQHVDDLTAEAERLRRENEAMRA 65 66899*************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-12	19	83	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	7.5E-8	20	65	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.369	21	84	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.4E-9	22	65	No hit	No description
SuperFamily	SSF57959	1.06E-8	23	66	No hit	No description
CDD	cd14702	7.48E-14	24	72	No hit	No description
PROSITE pattern	PS00036	0	26	41	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MVATAAAAPQ GARRAAVATE EERRRKRMTS NRLSARKSRM KRQQHVDDLT AEAERLRREN 60 EAMRAGAGEA LRPGRALEQE NRVLAAHARQ LCAALLLRNS QLRLLGGVAG VPLDVPGVPD 120 HLVQLYGGPH QMPVTPLAPP PPLQLPLEIQ MLLQPADVMD AVGVLV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG583700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728266	1e-132	KJ728266.1 Zea mays clone pUT6543 bZIP transcription factor (bZIP24) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792835.1	8e-80	bZIP transcription factor 53-like
TrEMBL	A0A2S3IRA2	2e-78	A0A2S3IRA2_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CDI1	2e-78	A0A2T7CDI1_9POAL; Uncharacterized protein
STRING	Pavir.Ib01437.1.p	1e-112	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12504	28	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	1e-08	basic region/leucine zipper motif 53

Link Out ? help Back to Top
Phytozome	Pavir.9KG583700.1.p