PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG551400.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 372aa    MW: 39740.1 Da    PI: 9.1875
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG551400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.1e-322679255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR 
  Pavir.9KG551400.2.p 26 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYRN 79
                         8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-312280IPR009057Homeodomain-like
PROSITE profilePS5129412.6532282IPR017930Myb domain
SuperFamilySSF466896.99E-162480IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-242679IPR006447Myb domain, plants
PfamPF002497.1E-102778IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MTMVRTAVVG RERSGGVRQY NRSKVPRLRW TPDLHHCFVH AIHKLGGQDK ATPKRVLQLM  60
GVGGLTISHV KSHLQMYRNM RNGIGMQGST MQQVPRPDEE HIYGGGRGMH VELCSEDAQR  120
QQWWDHECDG PCCCICRSPK PRKEPTMPLL LHPQLKRTET RREREEEDYG GSASPKSLLL  180
RGPGPGICEG DGSSPPRLYR ALAAAAAGGY NYMRIMQAAM GGGVAAAAPP HAEAGVVVEP  240
LQGAGIKRQR HEARPLAAAD GGHGASAPPP PSPCSSKLFT FLGFVVAPGP CRDHPSEIAG  300
RRTPTGHSVP PTANRLPPSK MKTAKQAHDD DDRGCSLSLT LALDAGGSGE ETTSSAGSRI  360
SLDLSLSTSS N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-182781458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-182781458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-182781458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-182781458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-182781458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-182781458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-182781458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-182781458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG551400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0689101e-103BT068910.1 Zea mays full-length cDNA clone ZM_BFc0191L18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792174.11e-174uncharacterized protein LOC112873442
TrEMBLA0A2T8I6K31e-173A0A2T8I6K3_9POAL; Uncharacterized protein
STRINGPavir.Ib00180.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.17e-27G2-like family protein