PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG551400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 374aa MW: 39928.3 Da PI: 9.1875 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.1 | 7.1e-32 | 26 | 79 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR Pavir.9KG551400.1.p 26 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYRN 79 8****************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-31 | 22 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.653 | 22 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.99E-16 | 24 | 80 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-24 | 26 | 79 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.2E-10 | 27 | 78 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MTMVRTAVVG RERSGGVRQY NRSKVPRLRW TPDLHHCFVH AIHKLGGQDK ATPKRVLQLM 60 GVGGLTISHV KSHLQMYRNM RNGIGMQGST MQQVPRPDEE HIYGGGRGMH VELCSEDAQR 120 QQWWDHECDG PCCCICRSPK PRKEPTMPLL LHPQLKSTRT ETRREREEED YGGSASPKSL 180 LLRGPGPGIC EGDGSSPPRL YRALAAAAAG GYNYMRIMQA AMGGGVAAAA PPHAEAGVVV 240 EPLQGAGIKR QRHEARPLAA ADGGHGASAP PPPSPCSSKL FTFLGFVVAP GPCRDHPSEI 300 AGRRTPTGHS VPPTANRLPP SKMKTAKQAH DDDDRGCSLS LTLALDAGGS GEETTSSAGS 360 RISLDLSLST SSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-18 | 27 | 81 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-18 | 27 | 81 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-18 | 27 | 81 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-18 | 27 | 81 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-18 | 27 | 81 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-18 | 27 | 81 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-18 | 27 | 81 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-18 | 27 | 81 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG551400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068910 | 1e-103 | BT068910.1 Zea mays full-length cDNA clone ZM_BFc0191L18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792174.1 | 1e-177 | uncharacterized protein LOC112873442 | ||||
TrEMBL | A0A2T8I6K3 | 1e-176 | A0A2T8I6K3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib00180.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7610 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 6e-27 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG551400.1.p |