PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG540200.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 402aa    MW: 45076.6 Da    PI: 5.1483
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG540200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.52.1e-33291212103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++ +isw   g sfv++d++ f++++L+++Fkh++f+SF+RQLn+YgF+kv+ ++         we++++ F k++k
  Pavir.9KG540200.3.p  29 FLTKVYDMVSDPATDAVISWGPGGGSFVIWDSHAFERDLLARHFKHNHFTSFIRQLNTYGFHKVDPDR---------WEWANEGFVKDQK 109
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++ikrkk++
  Pavir.9KG540200.3.p 110 HLLKTIKRKKKS 121
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.94E-3325118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-5425118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-3526118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.1E-172952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.8E-3029118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-176779IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-178092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MPAPHRRGKA PPAAAPVGVV PKPPDVAPFL TKVYDMVSDP ATDAVISWGP GGGSFVIWDS  60
HAFERDLLAR HFKHNHFTSF IRQLNTYGFH KVDPDRWEWA NEGFVKDQKH LLKTIKRKKK  120
SAQDATSDLQ PAPVKTAPGT ENIEIGKYGG LEKEVETLKR DKALLMQQLV DLRQYQQSSS  180
LEVQNLIQRL HVMEQNQQQM MALLAIVVQN PNFLNQLVQQ QRRSNWWNDD GRRKRRFRAL  240
EQGPAADQET SVAGAQIIQY HPPIPETSNQ VIPVNGAFSP TTAQPVSSPE TAMPMDVETT  300
SNSVDPLAST GDLFTNTFAL SGWDDMFLGC EIEDILASEQ DFEMGEQQNS QVEPPLTVED  360
YTEYPVFHTP QLELEQQPQD CQMVAQQGHK NPQYADIITK A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-232312214124Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG540200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0431890.0BT043189.1 Zea mays full-length cDNA clone ZM_BFc0119D19 mRNA, complete cds.
GenBankEU9609090.0EU960909.1 Zea mays clone 229513 heat shock factor protein HSF8 mRNA, complete cds.
GenBankJX4284990.0JX428499.1 Zea mays subsp. mays clone pUT3097 HSF14 HSF type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795547.10.0heat stress transcription factor A-9-like
SwissprotQ10PR41e-176HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLA0A2T7CFJ10.0A0A2T7CFJ1_9POAL; Uncharacterized protein
STRINGPavir.Ib00928.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.14e-69heat shock factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]