PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG530200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 26212.7 Da PI: 7.1665 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.1e-15 | 22 | 67 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +WT+eEd l + v+ +G+ +W++I++ ++ gR +k+c++rw ++ Pavir.9KG530200.1.p 22 KSAWTKEEDAALREQVRAHGPQNWAAISAALP-GRNPKSCRLRWWQH 67 579*****************************.***********766 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.2e-16 | 77 | 119 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+++++++++++++ W+tIa ++ gR+++ +k+rw+++ Pavir.9KG530200.1.p 77 PFTPEEDDKIACLHRLYPNK-WATIAGFLP-GRSDNAVKNRWNSV 119 79******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.64 | 17 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.84E-29 | 20 | 116 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 20 | 70 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-16 | 21 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 22 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.22E-15 | 24 | 68 | No hit | No description |
SMART | SM00717 | 7.1E-13 | 74 | 122 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.507 | 76 | 124 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.3E-15 | 77 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.96E-12 | 77 | 120 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-18 | 77 | 120 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAMQDDEAAA EAGGVHPVAM KKSAWTKEED AALREQVRAH GPQNWAAISA ALPGRNPKSC 60 RLRWWQHLTP AVDAVRPFTP EEDDKIACLH RLYPNKWATI AGFLPGRSDN AVKNRWNSVL 120 GKHPQPQHQQ WALAAPLRRV SDGTLPLFPL ASGDVRACGR SARVLRHPPP GDVAGDDLSG 180 ACLELFPLAP GDLAGANGTS EEAEMDVDRS DDDPTAAGLR LWPCTRAASM AAFKAMVQAV 240 RAP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 3e-27 | 22 | 122 | 2 | 101 | MYB3 |
3zqc_D | 3e-27 | 22 | 122 | 2 | 101 | MYB3 |
3zqc_G | 3e-27 | 22 | 122 | 2 | 101 | MYB3 |
3zqc_J | 3e-27 | 22 | 122 | 2 | 101 | MYB3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG530200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798530.1 | 1e-139 | myb-related protein 308-like | ||||
TrEMBL | A0A3L6SC90 | 1e-144 | A0A3L6SC90_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ib00896.1.p | 1e-176 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 2e-34 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG530200.1.p |