PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG520600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 383aa MW: 40922.1 Da PI: 9.8355 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 63.8 | 3.3e-20 | 298 | 360 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elk+++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++++++l+se+ Pavir.9KG520600.1.p 298 ERELKKQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCDSLTSEN 360 89***********************************************************98 PP | |||||||
2 | bZIP_1 | 20.7 | 8.9e-07 | 343 | 373 | 25 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 25 kaeieeLeekvkeLeaeNkaLkkeleelkke 55 k+e+++L+ek+++L++eN++L ++l+ l++e Pavir.9KG520600.1.p 343 KEELKQLQEKCDSLTSENTSLHEKLKALEDE 373 799*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 3.6E-29 | 1 | 101 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 6.7E-17 | 140 | 266 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.6E-15 | 293 | 356 | No hit | No description |
Pfam | PF00170 | 5.1E-18 | 298 | 360 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 8.6E-20 | 298 | 362 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.541 | 300 | 363 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.13E-9 | 301 | 357 | No hit | No description |
CDD | cd14702 | 4.87E-21 | 303 | 354 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 305 | 320 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MGKGDVATRS KSKKSSAIQN EQSTPTNPPT AYPDWSQFQA YYNAAGTAPV TPPAFFHSSV 60 APSPQGHPYM WGPQMMPPYG TPPPYAAMYA QGTPYQQAPM PPGSHLYSPY PMQSPNGTVQ 120 TPTSGAGGTE TDKSSKNKRK TPLKRSRGSL GSLDVVAAKS NKSPAKPSTS SSNEGSSQSE 180 SGSGSSSEGS STNSKSDSRV KDSSERGQGN DSRSKGAQSS AVESTQPSSG PVVLNPMMPF 240 WPVPPPMGGP ATTMNMGVDY WGAPASVPVH GKVIAAPASA PSSNSRDIVL SDPAIQDERE 300 LKKQKRKQSN RESARRSRLR KQAEWEEVAN RADLLKQENS SLKEELKQLQ EKCDSLTSEN 360 TSLHEKLKAL EDEKSNGNWY KD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 314 | 320 | RRSRLRK |
2 | 314 | 321 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5407 | 0.0 | callus| leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG520600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066528 | 0.0 | BT066528.1 Zea mays full-length cDNA clone ZM_BFb0014J02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795520.1 | 0.0 | bZIP transcription factor 16-like isoform X1 | ||||
Refseq | XP_025795521.1 | 0.0 | bZIP transcription factor 16-like isoform X1 | ||||
Swissprot | Q501B2 | 2e-87 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | A0A3L6S7R9 | 0.0 | A0A3L6S7R9_PANMI; Transcription factor HBP-1a-like | ||||
STRING | Pavir.Ib00998.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11506 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 5e-33 | basic region/leucine zipper transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG520600.1.p |
Publications ? help Back to Top | |||
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