PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG327600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 372aa MW: 38412.5 Da PI: 7.9356 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.8 | 6.1e-18 | 270 | 305 | 1 | 36 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 C++C + kTp+WR gp g+ktLCnaCG+++++ +l+ Pavir.9KG327600.1.p 270 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLM 305 ********************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.3E-16 | 264 | 314 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.227 | 268 | 300 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.4E-13 | 268 | 302 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 8.55E-14 | 268 | 328 | No hit | No description |
CDD | cd00202 | 3.51E-13 | 269 | 316 | No hit | No description |
Pfam | PF00320 | 1.3E-15 | 270 | 305 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 270 | 295 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MASEWEMAMG VELGMGMGTY HAHHHNASSI TAAPTSSHHR GAASFATPHH HHYYGMPPMA 60 GDAMRVDELL DLSTGPGAGA HDFFPTAAAA AATDNGHHHS GAMGEPSPTA NSSDHQTSLL 120 SFADEFYIPS EEAAELEWLS KFVDDSYSDM PNYSSAAHAA MAAAAAANAA GNGAGGNSAG 180 QDSCVTAAPG RGARSKRSRA TAAAAAAWHS LVPRPPSQSS PSSSSCSSSD FPSSNKPGRP 240 NGASGSRGKK SPGPGGATPE VGMEGGVRRC THCASEKTPQ WRTGPLGPKT LCNACGVRFK 300 SGRLMPEYRP AASPTFVLTQ HSNSHRKVME LRRQKELILI RGSHRDAAAA AAAAGSAGPR 360 PELMFRDYGV C* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.17053 | 0.0 | root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG327600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068804 | 0.0 | BT068804.1 Zea mays full-length cDNA clone ZM_BFb0383N16 mRNA, complete cds. | |||
GenBank | BT087798 | 0.0 | BT087798.1 Zea mays full-length cDNA clone ZM_BFb0206G21 mRNA, complete cds. | |||
GenBank | EU956206 | 0.0 | EU956206.1 Zea mays clone 1559028 GATA transcription factor 9 mRNA, complete cds. | |||
GenBank | KJ726957 | 0.0 | KJ726957.1 Zea mays clone pUT3655 C2C2-GATA transcription factor (GATA28) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795835.1 | 0.0 | GATA transcription factor 2-like | ||||
Swissprot | O49741 | 1e-57 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | A0A3L6TQM8 | 0.0 | A0A3L6TQM8_PANMI; GATA transcription factor | ||||
STRING | Pavir.Ib02277.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4621 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 9e-46 | GATA transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG327600.1.p |
Publications ? help Back to Top | |||
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