PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG314200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 343aa    MW: 37705.4 Da    PI: 9.827
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG314200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.7e-322578255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         prlrWtp+LH+rFv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR 
  Pavir.9KG314200.2.p 25 PRLRWTPDLHRRFVHAIHRLGGQHKATPKRVLQLMGVGGLTISHVKSHLQMYRN 78
                         8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7312181IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.4E-312180IPR009057Homeodomain-like
SuperFamilySSF466895.2E-162379IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-242578IPR006447Myb domain, plants
PfamPF002496.3E-102677IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MERAMAPGRE RVEGAVRPYN RSKVPRLRWT PDLHRRFVHA IHRLGGQHKA TPKRVLQLMG  60
VGGLTISHVK SHLQMYRNMR TDYLDIKEMQ QVVDPAQMFA GGVRVWTDMA EQDHQGYYCW  120
CCCYSQKESL LLHDLQLKRS ISQMDTTQKA RLQVQLQGTR RDGDVSSFGM RGGLSDYHHQ  180
AGVGYHCCAR AMVHGGQQLR SRAWRCPTPT PTVAADNGGE QHAAPAPGTL PGPLRFLQEG  240
ESMCAHSSTA PNNRWPTAVK KRGGEGRESS PPLSLTLDSG FCGSRDEDGS GRRDSQGSSS  300
ASSAPTGSAG RGCSGQHSGR GRISLDLSLS MPMYTQTRNQ SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-172680357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-172680357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-172680357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-172680357Protein PHOSPHATE STARVATION RESPONSE 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG314200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572016.38e-54uncharacterized protein LOC100832345
TrEMBLA0A2T8I4621e-172A0A2T8I462_9POAL; Uncharacterized protein
STRINGPavir.J33581.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-29G2-like family protein