PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG314200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 359aa MW: 39457.5 Da PI: 9.4528 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.6 | 5.1e-32 | 25 | 78 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH+rFv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR Pavir.9KG314200.1.p 25 PRLRWTPDLHRRFVHAIHRLGGQHKATPKRVLQLMGVGGLTISHVKSHLQMYRN 78 8****************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-30 | 21 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.731 | 21 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.55E-16 | 23 | 79 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-24 | 25 | 78 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.7E-10 | 26 | 77 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MERAMAPGRE RVEGAVRPYN RSKVPRLRWT PDLHRRFVHA IHRLGGQHKA TPKRVLQLMG 60 VGGLTISHVK SHLQMYRNMR TDYLDIKEMQ QVVDPAQMFA GGVRVWTDMA EQDHQGYYCW 120 CCCYSQKESL LLHDLQLKRV ITKPEAPEET CPPCRSISQM DTTQKARLQV QLQGTRRDGD 180 VSSFGMRGGL SDYHHQAGVG YHCCARAMVH GGQQLRSRAW RCPTPTPTVA ADNGGEQHAA 240 PAPGTLPGPL RFLQEGESMC AHSSTAPNNR WPTAVKKRGG EGRESSPPLS LTLDSGFCGS 300 RDEDGSGRRD SQGSSSASSA PTGSAGRGCS GQHSGRGRIS LDLSLSMPMY TQTRNQSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-17 | 26 | 80 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-17 | 26 | 80 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-17 | 26 | 80 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-17 | 26 | 80 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG314200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2T8I462 | 1e-169 | A0A2T8I462_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J33581.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7610 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 2e-29 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG314200.1.p |