PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG294800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 288aa    MW: 32870.9 Da    PI: 8.8665
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG294800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like231.8e-0721433055
              G2-like 30 ktilelmkvkgLtlehvkSHLQkYRl 55
                         +++l+lm++kgLt   +kSHLQkYRl
  Pavir.9KG294800.1.p 21 QSVLRLMGMKGLT---LKSHLQKYRL 43
                         689*********9...59*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-71946IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MHCSGRILLG LAADRNRSDA QSVLRLMGMK GLTLKSHLQK YRLGRQEKKS TGPELANGSV  60
HMAMSDARYK LLGGGQYPSE CDEDAPVPPA LQVPFCRCEP GNQLAEWIDG PDKFDPRIRL  120
FPYYRSESWA YNEFRRWVPP PPNPPPMTEE EKQEAAIYRV NNPPKCHCGV RAKLQRPNIG  180
VPPKFTPFFR CSLKTRDGWP ACDFNEYIYG PRSHWPIEEE VREFESGKKP WPCTTTPSLR  240
CKRGILATKG VVPSELGYRY YCGNSYEEYW VHILTTKLKL LMILSLC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG294800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368PLA75e-77A0A368PLA7_SETIT; Uncharacterized protein
STRINGPavir.Ib03488.1.p1e-141(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.16e-07G2-like family protein