PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG289300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 235aa MW: 25498.1 Da PI: 8.2273 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 26.2 | 1.7e-08 | 66 | 110 | 8 | 52 |
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +r NR A r++R++Kka ++ Lee+v L a N++L k+l++ Pavir.9KG289300.1.p 66 KRPSGNRAAVRKYREKKKAHTASLEEEVVHLRALNQQLMKKLQNH 110 56667**********************************999874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.6E-13 | 56 | 127 | No hit | No description |
SMART | SM00338 | 6.9E-7 | 59 | 126 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 2.2E-14 | 62 | 116 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.95E-8 | 63 | 110 | No hit | No description |
CDD | cd14686 | 2.03E-11 | 71 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDSYFDDILK DTEHHACTHT HTCNPPVHDL SHTHTCIHVH TKIVTASPDA AKTAESPSEN 60 NNASKKRPSG NRAAVRKYRE KKKAHTASLE EEVVHLRALN QQLMKKLQNH AALEAEVARL 120 RCLLVDIRGR IEGEIGAFPY QRPVKNIDLV SSVDQGSFLG AAQVASSCDF RCNVQMYCNP 180 GMQGAMSAQV LGQGPCDVAN IQCMRTAKSG STKLPVCAGM DTLPAGCLPN VEKK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.42493 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG289300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966469.1 | 1e-160 | basic leucine zipper 23 | ||||
Swissprot | Q8GTS2 | 2e-66 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | K3XYU9 | 1e-159 | K3XYU9_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J21984.1.p | 1e-175 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4175 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 2e-58 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG289300.1.p |
Publications ? help Back to Top | |||
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