PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9KG225900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 299aa MW: 30967.7 Da PI: 8.6499 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.8e-14 | 144 | 188 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++++ ++lG g+W+ I+r + ++Rt+ q+ s+ qk+ Pavir.9KG225900.1.p 144 PWSEEEHRLFLEGLEKLGRGDWRGISRGFVTTRTPTQVASHAQKF 188 8******************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 22 | No hit | No description |
PROSITE profile | PS51294 | 17.898 | 137 | 193 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.46E-17 | 139 | 194 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-17 | 140 | 192 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.2E-10 | 141 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-11 | 141 | 191 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-11 | 144 | 187 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.39E-10 | 144 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 299 aa Download sequence Send to blast |
MHTVASRCSR CGGGCGHSSI ACRVAATADQ RGGEAATMRS GGGAAAGLRL FGVQLGAAAA 60 GGAASPALQL HKSYSVDCLN LQGSAPAYAA LVAAPLLLSP SPSSALLLSI DECSTERATD 120 GGGYLSDDGA RGGTALRERK KGVPWSEEEH RLFLEGLEKL GRGDWRGISR GFVTTRTPTQ 180 VASHAQKFFL RQNSAGKKSN AKRRSSLFDL VQNCENGLVS DSSDGKAAAT SESLSPKASC 240 DVYRKESTAI HERMTRPSSE RAPVSEKVTG ATEQAHGYHC SPLNLELGMS LTTPSIGT* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.31968 | 0.0 | root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9KG225900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF184673 | 1e-82 | KF184673.1 Saccharum hybrid cultivar R570 clone BAC 008G08 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961036.3 | 1e-171 | transcription factor SRM1 | ||||
TrEMBL | A0A3L6R709 | 1e-177 | A0A3L6R709_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J38363.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4932 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47390.1 | 1e-38 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9KG225900.1.p |