PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG104500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 239aa    MW: 24508.8 Da    PI: 9.0106
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG104500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001782104123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cgk F+++  L  H ++H
  Pavir.9KG104500.1.p  82 HRCSVCGKAFPSHQALGGHKSSH 104
                          79**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.59382109IPR007087Zinc finger, C2H2
SuperFamilySSF576679.75E-1082104No hitNo description
PfamPF139126.0E-1182106IPR007087Zinc finger, C2H2
SMARTSM003550.01682104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SuperFamilySSF576679.75E-10144171No hitNo description
PfamPF139123.7E-13148173IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328149171IPR007087Zinc finger, C2H2
SMARTSM003550.18149171IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAAMVGVALD APATPWTLPE EGAVSAREGA ADGWARRKRS RSRRHLRRVG AAPTEEEHLA  60
LCLLMLARGQ RDARAPAPQQ EHRCSVCGKA FPSHQALGGH KSSHRARPPP AAPTPAAEEP  120
AAAAPSASPA ASSSTSGAAG SSGSGGRVHE CSVCRKTFPT GQALGGHKRC HYAGAAGATT  180
TNVASTSAGL MSCRGFDLNV PALPDIITAG DRCMPAAEEE DEVLSPLAFK KPRLMILA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13742KRSRSR
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During germination, abundant up to fourteen hours after imbibition. Levels decrease slightly after this and then gradually increase again. {ECO:0000269|PubMed:8223628}.
UniprotTISSUE SPECIFICITY: Highest levels in the root apex of wheat seedlings, lowest levels in leaf proximal region. {ECO:0000269|PubMed:8223628}.
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG104500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794414.12e-99zinc finger protein 1-like
SwissprotQ424306e-49ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A3L6TLR61e-104A0A3L6TLR6_PANMI; Zinc finger protein 1-like
STRINGPavir.J15423.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.28e-32zinc-finger protein 2