PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG103700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 254aa MW: 25941.2 Da PI: 9.0098 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F+++ L H ++H Pavir.9KG103700.1.p 84 HRCSVCGKAFPSHQALGGHKSSH 106 79**************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.016 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.593 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.86E-9 | 84 | 106 | No hit | No description |
Pfam | PF13912 | 6.6E-11 | 84 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.86E-9 | 158 | 185 | No hit | No description |
Pfam | PF13912 | 3.9E-13 | 162 | 187 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 163 | 185 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.328 | 163 | 185 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 165 | 185 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MAAAVGAARD APATPWTLPE EGAVSGSARE GSADGWARRK RSRSRRRLRR AAPTEEEHLA 60 VCLLMLARGQ RDARAPPAAQ QQEHRCSVCG KAFPSHQALG GHKSSHRARP PPPPAAPTPA 120 AEEEPAAAPA PPAAAVPSAS PAASSSTSGA AAGSISGGSG RVHECSVCRK TFPTGQALGG 180 HKRCHYEGAG GGATTTNVPS TSAGLMSCRG FDLNVPALPD IITAGDRCMP AAEEEDEVLS 240 PLAFKKQRLM ILA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 46 | RKRSRSRRR |
2 | 38 | 48 | RKRSRSRRRLR |
3 | 39 | 44 | KRSRSR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During germination, abundant up to fourteen hours after imbibition. Levels decrease slightly after this and then gradually increase again. {ECO:0000269|PubMed:8223628}. | |||||
Uniprot | TISSUE SPECIFICITY: Highest levels in the root apex of wheat seedlings, lowest levels in leaf proximal region. {ECO:0000269|PubMed:8223628}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG103700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794414.1 | 2e-94 | zinc finger protein 1-like | ||||
Swissprot | Q42430 | 9e-47 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A3L6TLR6 | 2e-99 | A0A3L6TLR6_PANMI; Zinc finger protein 1-like | ||||
STRING | Pavir.J15423.1.p | 1e-105 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 3e-29 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG103700.1.p |