PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG102500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 287aa    MW: 30376 Da    PI: 6.9896
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG102500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.83.3e-4271061100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrrkC+++Cv+apyfp ++p+kfanvh++FGasnv+kll++lp+ +reda++sl+yeAear+rdPvyG+v+ i+ lq +l+q+
  Pavir.9KG102500.1.p   7 PCAACKLLRRKCTQGCVFAPYFPPDNPAKFANVHRVFGASNVSKLLNELPQAQREDAVNSLAYEAEARLRDPVYGCVSYISVLQLRLKQA 96 
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +++la++++e
  Pavir.9KG102500.1.p  97 REDLAAARKE 106
                          *****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.536107IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-427104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DNPAKFANVH RVFGASNVSK LLNELPQAQR  60
EDAVNSLAYE AEARLRDPVY GCVSYISVLQ LRLKQAREDL AAARKELAGY IGPAAFAPFV  120
APPHAQYHHH HQYAGVSLAA GMGLGVGVAP PQHGHPQQQM MVQHHQHLHH HQQMAEAQQL  180
AAAVEVAREQ DLMMRQAAAY AHAVPGSSAG ATVAVVPPDA VPYEGGFLFQ QQQPPPSQAP  240
TAVALTYQME QSPPPSSSGQ SHPEVSHQQN TDGSDEGSGG GAAPPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-4841108114LOB family transfactor Ramosa2.1
5ly0_B7e-4841108114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG102500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3681341e-124AK368134.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2068L23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794967.11e-143protein ASYMMETRIC LEAVES 2-like
TrEMBLA0A3L6TII41e-144A0A3L6TII4_PANMI; LOB domain-containing protein 6
STRINGPavir.Ib03943.1.p1e-152(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-58ASYMMETRIC LEAVES 2-like 1