PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG100500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 555aa    MW: 62872.6 Da    PI: 9.0353
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG100500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.7e-1545127896
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           d+++++ l++p++f++++ gk   s  ++le+++g   +v++    + +++vl++GW+ Fv+an++ke+ f++F+++++s+f   v +
  Pavir.9KG100500.1.p  45 MDANSKHSLIVPNRFVKRFAGK--LSGRIKLESPNGTLHNVEV--IERYDKMVLQRGWEAFVDANHIKENNFMLFRRIEKSRF--EVLI 127
                          48889999***********888..6668***************..77777899***********************9887888..5554 PP
2B3443.9e-142713551599
                          -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                   B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                           lv++k++a +h    +e++ ltl+  +++++W  ++ +r+ ++ y+l++ W +Fv++n+++egD++++   ++ ++f+l+v ++r+
  Pavir.9KG100500.1.p 271 YLVISKEYALAHFP--HETTYLTLQRpSKSKKWHPRFYIRNDRRVYMLRGQWLDFVRDNHVQEGDICLLLPAKTgRKFTLTVYLLRA 355
                          59**********73..45668999994555*******77888888*************************99888*******99986 PP
3B352.49.4e-17463551899
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                          s v ++++l +  ++a+++   +++++t ++ + +g++W+  + +r++s r +l++GW +Fv +ngL++gD+++F+ +++ s+ ++ v+v
  Pavir.9KG100500.1.p 463 SVVVSKQMLEFGAHYAAAYL--PAREQT-MVLQCNGKTWNTDMVIRNGS-RLFLRGGWPKFVCDNGLRVGDICLFEQKKNeSKLTMEVHV 548
                          44445555566666666663..344444.55667*********766665.899***********************99888999****99 PP

                          E-S CS
                   B3  97 frk 99 
                          +++
  Pavir.9KG100500.1.p 549 ISR 551
                          987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-2036138IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-1936133IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2138131IPR003340B3 DNA binding domain
CDDcd100179.73E-1840128No hitNo description
SMARTSM010192.2E-841131IPR003340B3 DNA binding domain
PfamPF023623.2E-1344127IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-18248353IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-19251357IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.1E-8256356IPR003340B3 DNA binding domain
CDDcd100171.05E-17256351No hitNo description
PROSITE profilePS5086311.307257356IPR003340B3 DNA binding domain
PfamPF023628.2E-13263355IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-21447550IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-20448550IPR015300DNA-binding pseudobarrel domain
CDDcd100172.74E-19453547No hitNo description
PROSITE profilePS5086312.605456552IPR003340B3 DNA binding domain
SMARTSM010193.8E-11456552IPR003340B3 DNA binding domain
PfamPF023622.8E-15462551IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MSNANSVPMA RGDGSRMKKP CDCCKRYLDH LDEKNQPMSY FFRRMDANSK HSLIVPNRFV  60
KRFAGKLSGR IKLESPNGTL HNVEVIERYD KMVLQRGWEA FVDANHIKEN NFMLFRRIEK  120
SRFEVLILES DGCEKVFPCV GVRNTPCIQE RRLDSVDISS SYSHDTTESS GSQRFARCQR  180
SSCSHRGRTA NMTATSSSFE ESGEDASSEN TSFESDSLEI APKADYVLSS RRYLSEAQRK  240
KVIALIQEIK PEITVFVSIM RKCNVQSSGP YLVISKEYAL AHFPHETTYL TLQRPSKSKK  300
WHPRFYIRND RRVYMLRGQW LDFVRDNHVQ EGDICLLLPA KTGRKFTLTV YLLRATETHS  360
SDGSGTGLQR FGPCHGKSIK ELASPVHIKE ESTDGEHVSL ESSMKEISDG SLNSNDSGGP  420
CDPPYIVPGK SCLSRSQKKI VEAKVRSIQS EVPIYIVIMK SSSVVVSKQM LEFGAHYAAA  480
YLPAREQTMV LQCNGKTWNT DMVIRNGSRL FLRGGWPKFV CDNGLRVGDI CLFEQKKNES  540
KLTMEVHVIS REEF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.359140.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG100500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679276.10.0B3 domain-containing protein Os03g0619600
SwissprotQ6AV210.0Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A368SHL10.0A0A368SHL1_SETIT; Uncharacterized protein
STRINGPavir.Ib03958.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-18B3 family protein