PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG096300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 314aa    MW: 36256.5 Da    PI: 4.9327
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG096300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.2e-16851621396
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          ++ +++p  f+++++g+   + +++le+++g+s+ v +   k+++++ +++GW  Fvk  +L + Df+vFk++g+s+f  +v +
  Pavir.9KG096300.1.p  85 QHEMTVPVGFVKRFKGE--FPGEIKLETRNGESYCVGV--VKQPDKVSFSSGWGVFVKTYDLHTDDFLVFKYNGNSRF--NVII 162
                          5679**********888..6669***************..**********************************9999..5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.9E-1972164IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-1872164IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.92673166IPR003340B3 DNA binding domain
SMARTSM010192.1E-1175166IPR003340B3 DNA binding domain
CDDcd100173.75E-1675164No hitNo description
PfamPF023622.1E-1385162IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MHRSVLFRYG ENSQFYVIIF DQFGCEEVLS VLGDYVHLSH DPERCTDSTE AVKFCESCKD  60
LDEYKYYNLG NEEKYFLVFM KGDFQHEMTV PVGFVKRFKG EFPGEIKLET RNGESYCVGV  120
VKQPDKVSFS SGWGVFVKTY DLHTDDFLVF KYNGNSRFNV IILSRFGYEK ATSVVVNDEF  180
VPLHVQRSSR DDMEPVNPPN DHPETETIQM RSLPREGHTS IQKVSSTEGI NIMQHLDVQR  240
TCRDYFESVN ITHEHDVAET MQMRSLPWER QTSLQTDNIT QGNETMPHLC NEHGTIYAIS  300
SDFGDRMTTQ HLD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.235125e-33callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG096300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432332e-32AC243233.1 Panicum virgatum clone PV_ABa020-D05, complete sequence.
GenBankAC2432442e-32AC243244.1 Panicum virgatum clone PV_ABa073-D05, complete sequence.
GenBankAC2432492e-32AC243249.1 Panicum virgatum clone PV_ABa094-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9D3Q31e-84A0A0A9D3Q3_ARUDO; Uncharacterized protein
STRINGPavir.Ib03967.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-12B3 family protein