PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG092600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 367aa    MW: 39587.5 Da    PI: 9.0341
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG092600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.61.2e-5391361128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+ +yL++++++  +++ ++i++vdiyk++PwdLp++++ ++kewyfFs+rd+ky++g r+nra+ sgyWkatg+dk
  Pavir.9KG092600.1.p   9 LPPGFRFHPTDEELILHYLRNRAANAGCPV-DIIADVDIYKFDPWDLPSRAAYGDKEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDK 97 
                          79****************************.99***************888889************************************ PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s   ge vg+kk Lvfykgr pkg+kt+W+mheyrl
  Pavir.9KG092600.1.p  98 PIHSGaAGESVGVKKALVFYKGRPPKGTKTNWIMHEYRL 136
                          ***9878899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-653169IPR003441NAC domain
PROSITE profilePS5100562.2679169IPR003441NAC domain
PfamPF023651.7E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MIMANPAMLP PGFRFHPTDE ELILHYLRNR AANAGCPVDI IADVDIYKFD PWDLPSRAAY  60
GDKEWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH SGAAGESVGV KKALVFYKGR  120
PPKGTKTNWI MHEYRLAADA HAAHAYRPMK FRNASMRLDD WVLCRIYKKT SHASPMAVPP  180
LSDHEQDEPC GFDENRPYSA SSAGMLVQQQ VAYPVLHAAS SSGAPPRMPR IPSLTELFND  240
PSLAHFFEDG GVPDMARLDQ HQHHQPGGGA TLLGHPVTSQ LLINNNGNNL LSAGQMDSSA  300
STSAAAGHGA ASGNRKRSSE TSTSAGTASA AKKPNGSCFG ATFQIGNGLQ GSLGHHMLLH  360
SNMGMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-74917420173NAC domain-containing protein 19
3swm_B6e-74917420173NAC domain-containing protein 19
3swm_C6e-74917420173NAC domain-containing protein 19
3swm_D6e-74917420173NAC domain-containing protein 19
3swp_A6e-74917420173NAC domain-containing protein 19
3swp_B6e-74917420173NAC domain-containing protein 19
3swp_C6e-74917420173NAC domain-containing protein 19
3swp_D6e-74917420173NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG092600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280290.0KJ728029.1 Zea mays clone pUT6168 NAC transcription factor (NAC44) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798103.10.0NAC domain-containing protein 10-like
TrEMBLA0A2S3IQZ70.0A0A2S3IQZ7_9POAL; Uncharacterized protein
STRINGPavir.Ib01528.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.16e-83NAC-like, activated by AP3/PI