PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG076900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CPP | ||||||||
Protein Properties | Length: 567aa MW: 61485.8 Da PI: 7.0331 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.8 | 1.2e-14 | 457 | 495 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +++C+CkkskClk+YC Cfaa+++Cs C+C++C N+++ Pavir.9KG076900.2.p 457 CRRCSCKKSKCLKLYCACFAAKVYCSGLCSCQGCLNNHT 495 789*********************************987 PP | |||||||
2 | TCR | 23.4 | 1.2e-07 | 541 | 562 | 1 | 22 |
TCR 1 kekkgCnCkkskClkkYCeCfa 22 ++k+gCnC+ks+ClkkYCeCf+ Pavir.9KG076900.2.p 541 RHKRGCNCRKSSCLKKYCECFQ 562 589******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.0E-12 | 455 | 496 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 28.143 | 456 | 566 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.6E-10 | 458 | 493 | IPR005172 | CRC domain |
SMART | SM01114 | 0.037 | 541 | 566 | IPR033467 | Tesmin/TSO1-like CXC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MDPPESPPAP AGRPPAPSAA VSLYEDSPVF DFINSLSPIA TPKPLGSAQN VQLFKSSDLL 60 PDSSIFTSPQ VNPQKEYKPR TRDGYVQLSE GLSPSCQRNR IGISSRIELS GPPTIASENC 120 SPSEYATILP SKWPRPIPLG SEILRDAKRQ DTDGKADHNP DMGQVKLSST CYDHNGLDQL 180 DSSSSGRNVQ ENELTKQYND DLAACTSNLL ISRSGTGDDV MSKSDLSLEA QQLTWKLRSD 240 VIFSKSLMPM AQGKLEDSRR ELFDGSTGCY IQSVGAAEGV ATNHDPQMLP GVIQSQLDSN 300 EYFFDTFKVP SDGMALSEHQ CSGMHRRSLF NEKVRTSDLS GQSGSNLHHI NICGDNYLKP 360 SQSPVYALPG IGLHLNAVVS NASNTMPFTS SLPLPPEHNS PTTIVSCSET GLCSSEVNTL 420 IHDDQSSQKT MPSADKSCQE SYKKKRPKLQ NGDGGSCRRC SCKKSKCLKL YCACFAAKVY 480 CSGLCSCQGC LNNHTHEETV SCIRKRTESR NPLAFAPTVT RACDSGSDFG DDSNNTPASA 540 RHKRGCNCRK SSCLKKYCEC FQGCYC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG076900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797027.1 | 0.0 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | A0A2T7C3E1 | 0.0 | A0A2T7C3E1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J39238.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 4e-35 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG076900.2.p |