PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG076900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 671aa    MW: 73332.7 Da    PI: 8.06
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG076900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.51.5e-14457495341
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          +++C+CkkskClk+YC Cfaa+++Cs  C+C++C N+++
  Pavir.9KG076900.1.p 457 CRRCSCKKSKCLKLYCACFAAKVYCSGLCSCQGCLNNHT 495
                          789*********************************987 PP
2TCR49.96.3e-16541580140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnC+ks+ClkkYCeCf++g+ Cs +C+C +CkN+ 
  Pavir.9KG076900.1.p 541 RHKRGCNCRKSSCLKKYCECFQSGVGCSVNCRCASCKNSF 580
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-12455496IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.609456581IPR005172CRC domain
PfamPF036381.9E-10458493IPR005172CRC domain
SMARTSM011141.0E-14541582IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-11543579IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MDPPESPPAP AGRPPAPSAA VSLYEDSPVF DFINSLSPIA TPKPLGSAQN VQLFKSSDLL  60
PDSSIFTSPQ VNPQKEYKPR TRDGYVQLSE GLSPSCQRNR IGISSRIELS GPPTIASENC  120
SPSEYATILP SKWPRPIPLG SEILRDAKRQ DTDGKADHNP DMGQVKLSST CYDHNGLDQL  180
DSSSSGRNVQ ENELTKQYND DLAACTSNLL ISRSGTGDDV MSKSDLSLEA QQLTWKLRSD  240
VIFSKSLMPM AQGKLEDSRR ELFDGSTGCY IQSVGAAEGV ATNHDPQMLP GVIQSQLDSN  300
EYFFDTFKVP SDGMALSEHQ CSGMHRRSLF NEKVRTSDLS GQSGSNLHHI NICGDNYLKP  360
SQSPVYALPG IGLHLNAVVS NASNTMPFTS SLPLPPEHNS PTTIVSCSET GLCSSEVNTL  420
IHDDQSSQKT MPSADKSCQE SYKKKRPKLQ NGDGGSCRRC SCKKSKCLKL YCACFAAKVY  480
CSGLCSCQGC LNNHTHEETV SCIRKRTESR NPLAFAPTVT RACDSGSDFG DDSNNTPASA  540
RHKRGCNCRK SSCLKKYCEC FQSGVGCSVN CRCASCKNSF GKRNGVLLLA IEEKWRKEQK  600
QKALAQRKRN LHLTNRMWSV NLVIFHLPTI YLQHLRLSLA DLQSCFHLHA PNRQCQQPVA  660
LPNCTTLSLP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1346057814120Protein lin-54 homolog
5fd3_B5e-1346057814120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG076900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797027.10.0protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A2T7C3E10.0A0A2T7C3E1_9POAL; Uncharacterized protein
STRINGPavir.J39238.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.13e-50Tesmin/TSO1-like CXC domain-containing protein