PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG067400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | YABBY | ||||||||
Protein Properties | Length: 179aa MW: 20138 Da PI: 9.0286 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 234.4 | 2.6e-72 | 5 | 169 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 ++ +e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl q l++++h +l +e + ++ ++ ++++n++++ Pavir.9KG067400.1.p 5 QIAPPPEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLIGLIQSLPVQNH--SQLVQENFKVHNIHNISFTENYSEYAP 92 567889******************************************************9..6777777888889999*********** PP YABBY 92 astsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s++ ++ ++ + +++++ + +r ekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl Pavir.9KG067400.1.p 93 SSSKFRMPMMfsAKGDQDHMLH----VRALEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 169 *****99998744555556665....899**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.8E-70 | 9 | 169 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.07E-7 | 115 | 163 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.6E-4 | 119 | 163 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MSSAQIAPPP EHVCYVHCNF CNTILAVSVP SNSMLNIVTV RCGHCTSLLS VNLIGLIQSL 60 PVQNHSQLVQ ENFKVHNIHN ISFTENYSEY APSSSKFRMP MMFSAKGDQD HMLHVRALEK 120 RQRVPSAYNR FIKEEIRRIK ASNPAISHRE AFSTAAKNWA HFPNIHFGLG THEKQQEA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5951 | 0.0 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG067400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795818.1 | 1e-109 | protein YABBY 2-like isoform X2 | ||||
Swissprot | Q10FZ7 | 2e-94 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A2T7C330 | 1e-111 | A0A2T7C330_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib04136.1.p | 1e-131 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-55 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG067400.1.p |