PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG311100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 282aa    MW: 30879.7 Da    PI: 7.8519
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG311100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.7e-174790146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         rg +T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Pavir.8NG311100.2.p 47 RGDFTADEQLLILDLHSRWGNR-WSKIASHLP-GRTDNEIKNYWRT 90
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.6352041IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-72244IPR009057Homeodomain-like
SuperFamilySSF466894.6E-2227102IPR009057Homeodomain-like
PROSITE profilePS5129423.3534296IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-244595IPR009057Homeodomain-like
SMARTSM007171.9E-154694IPR001005SANT/Myb domain
PfamPF002491.6E-154790IPR001005SANT/Myb domain
CDDcd001679.09E-125090No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSKVYIIKFL CVADAAVFGV SMHAGLKRTG KSCRLRWLNY LRPDVKRGDF TADEQLLILD  60
LHSRWGNRWS KIASHLPGRT DNEIKNYWRT RVQKHAKQLN CDVNSKRFKD AMRFLWMPRL  120
AERAAAAHHS SSASLQHQQQ QAIISGDGLG ALLPTAAAAA GCFEMATANA AADRSPCSVV  180
TTTNSSPCSS GTSSGSTAAT TNDDDCWAAI QQDHEFWSAA SNLQHLTAGS ADQQLLYFPL  240
AADLPMQADL SGWVQGFSEG GSSSPETHQQ LWSLDDIWRM H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-17289437103C-Myb DNA-Binding Domain
1msf_C6e-17289437103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG311100.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284141e-119KJ728414.1 Zea mays clone pUT6719 MYB transcription factor (MYB4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827780.11e-112transcription factor JAMYB-like
SwissprotQ2QZJ87e-77JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A2S3IFS21e-111A0A2S3IFS2_9POAL; Uncharacterized protein
TrEMBLA0A2T8IAC91e-111A0A2T8IAC9_9POAL; Uncharacterized protein
STRINGPavir.Ha00303.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-57myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]