PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG309800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 582aa MW: 66259.2 Da PI: 7.2136

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG309800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	309	1.1e-94	202	573	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 ++lL++cA+av+++++ + +lL++++++as +gd++qR+a++ft++L+arl++++s+l k l +++ s +e l+a++l++ ++ + Pavir.8NG309800.1.p 202 RTLLISCAQAVATDNHLGVCELLKKIKKHASTTGDATQRVAQCFTKGLEARLVGTGSQLWKLLMAERPS---IVEFLKAYRLYFAACCFN 288 789********************************************************99999988...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv.pfef 178 k+s +I a+ g++++Hi+D++ G+QW+ Ll+ LasR++ p++RiT++g+++ + +e++ee+g rL+k A+e+g+ +f+f Pavir.8NG309800.1.p 289 KVSLSFSTMTIFHAMVGKRKLHIVDYGTHFGFQWAGLLRLLASREGVLPEVRITAIGPSKLKscPAEQIEELGCRLSKCAHEFGLaSFKF 378 ******************************************************8877999***************957* PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 ++ ++k++ed+++e+L+++++E+l+Vn ++ h+l+desv + +rd+vL+ +k+++P+v+v + ++++ ++sFl+rf e ++yy++ Pavir.8NG309800.1.p 379 HT-IMKKWEDVRIEDLNTDTDEVLVVNDLFSFHTLMDESVFYDGqnPRDTVLNNIKKMRPDVFVQSILNCSC-DSSFLTRFREVMSYYMT 466 .7*******************************97765559********************9.889********** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356 +fd lea++pres+ r+++E+++lgr + n++aceg + +er e++++W+ r ++aG++++pl+ ++++ k ++rk++ + + + ++ + Pavir.8NG309800.1.p 467 IFDILEATMPRESKSRVVLEQFVLGRPAFNIIACEGPDLVERPEKYRQWQVRNQRAGLRQLPLKLRIVEVTKDIVRKHHHKDFLICQDGQ 556 ***************************************************************************888**** PP GRAS 357 slvlgWkdrpLvsvSaW 373 +l++gW++r L++ S W Pavir.8NG309800.1.p 557 WLLQGWMGRVLFAHSTW 573 *************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	50.23	175	554	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-92	202	573	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MMLPYISRVL LEDDIDDNKL NDHPALLQVL QPFAQILSSS STSSYGANTC NTDGAKDLLQ 60 HGGDDESTLN RNSALSKGKD AVLAFLKGME EANMLLPKDN KFIGDVQVNP MVWESSNHTG 120 DKKRYDRDNH MEEQIRTSKA AKMIKDPEEN YANEMLDEMM MHAYETCIRG MEELRVSMDN 180 KVDKENRKKC NKAVKDNVVD IRTLLISCAQ AVATDNHLGV CELLKKIKKH ASTTGDATQR 240 VAQCFTKGLE ARLVGTGSQL WKLLMAERPS IVEFLKAYRL YFAACCFNKV SLSFSTMTIF 300 HAMVGKRKLH IVDYGTHFGF QWAGLLRLLA SREGVLPEVR ITAIGPSKLK SCPAEQIEEL 360 GCRLSKCAHE FGLASFKFHT IMKKWEDVRI EDLNTDTDEV LVVNDLFSFH TLMDESVFYD 420 GQNPRDTVLN NIKKMRPDVF VQSILNCSCD SSFLTRFREV MSYYMTIFDI LEATMPRESK 480 SRVVLEQFVL GRPAFNIIAC EGPDLVERPE KYRQWQVRNQ RAGLRQLPLK LRIVEVTKDI 540 VRKHHHKDFL ICQDGQWLLQ GWMGRVLFAH STWVAEDTSS Q*

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MMLPYISRVL LEDDIDDNKL NDHPALLQVL QPFAQILSSS STSSYGANTC NTDGAKDLLQ  60
HGGDDESTLN RNSALSKGKD AVLAFLKGME EANMLLPKDN KFIGDVQVNP MVWESSNHTG  120
DKKRYDRDNH MEEQIRTSKA AKMIKDPEEN YANEMLDEMM MHAYETCIRG MEELRVSMDN  180
KVDKENRKKC NKAVKDNVVD IRTLLISCAQ AVATDNHLGV CELLKKIKKH ASTTGDATQR  240
VAQCFTKGLE ARLVGTGSQL WKLLMAERPS IVEFLKAYRL YFAACCFNKV SLSFSTMTIF  300
HAMVGKRKLH IVDYGTHFGF QWAGLLRLLA SREGVLPEVR ITAIGPSKLK SCPAEQIEEL  360
GCRLSKCAHE FGLASFKFHT IMKKWEDVRI EDLNTDTDEV LVVNDLFSFH TLMDESVFYD  420
GQNPRDTVLN NIKKMRPDVF VQSILNCSCD SSFLTRFREV MSYYMTIFDI LEATMPRESK  480
SRVVLEQFVL GRPAFNIIAC EGPDLVERPE KYRQWQVRNQ RAGLRQLPLK LRIVEVTKDI  540
VRKHHHKDFL ICQDGQWLLQ GWMGRVLFAH STWVAEDTSS Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-32	208	574	26	379	Protein SCARECROW
5b3h_A	4e-32	208	574	25	378	Protein SCARECROW
5b3h_D	4e-32	208	574	25	378	Protein SCARECROW
5hyz_A	4e-32	205	573	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG309800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008677891.1	0.0	scarecrow-like protein 34 isoform X1
Refseq	XP_008677892.1	0.0	scarecrow-like protein 34 isoform X2
TrEMBL	A0A3L6Q265	0.0	A0A3L6Q265_PANMI; GRAS transcription factor
STRING	Pavir.Ha00217.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-111	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.8NG309800.1.p