PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG247200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 131aa MW: 15070 Da PI: 9.6838 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.8 | 1e-19 | 1 | 80 | 10 | 89 |
FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +GF+vrk++++ s+ +ge+t+ ++vCs+eg+r++ +++ + + raetrt+Cka + + +++ +++evt+++leHnH l Pavir.8NG247200.1.p 1 MGFDVRKRYKNVSRYDGEVTSCRYVCSNEGHRRKGQSD-NAPKLFRAETRTDCKAWMSLILDReAKNYEVTDVVLEHNHLL 80 7*********************************9999.99999**************99998899*************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-15 | 1 | 80 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MGFDVRKRYK NVSRYDGEVT SCRYVCSNEG HRRKGQSDNA PKLFRAETRT DCKAWMSLIL 60 DREAKNYEVT DVVLEHNHLL HLPETRHLMT ADDSGIRPKA AHELASRQVG GSLNLSYTCR 120 DRKNYLQSKR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG247200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462668.1 | 4e-73 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_021310602.1 | 3e-73 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A287W7A6 | 8e-63 | A0A287W7A6_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287W7H4 | 1e-62 | A0A287W7H4_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A453IBS9 | 4e-62 | A0A453IBS9_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453IBT4 | 6e-62 | A0A453IBT4_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453IBT6 | 8e-64 | A0A453IBT6_AEGTS; Uncharacterized protein | ||||
STRING | Sb02g029930.1 | 1e-72 | (Sorghum bicolor) | ||||
STRING | Sb02g042670.1 | 5e-74 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-08 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG247200.1.p |