PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG227200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 273aa    MW: 29998.3 Da    PI: 9.0804
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG227200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.71.2e-36151431128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          l pGf+F+Ptde++vv+yL++++ +++l+    i +vdi++++Pw+L     +++ e y+Fs+  ++ + g+ ++ra+ +g Wka+gkd 
  Pavir.8NG227200.1.p  15 LEPGFKFKPTDEDVVVHYLRPRAMNEPLPS-GYIVDVDILNHNPWELV---PEGSVEKYYFSRMVTRWPLGNWRKRAAGDGHWKASGKDV 100
                          579*************************99.89**************4...3566799******************************** PP

                  NAM  91 evlsk..kgel...vglkktLvfykgrapkgektdWvmheyrl 128
                          +++sk  +g++   vglkkt+vfy+g+ap ge+t+Wvm+eyrl
  Pavir.8NG227200.1.p 101 PIFSKgiNGRVplmVGLKKTMVFYRGKAPFGENTEWVMEEYRL 143
                          ****8663333788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-397153IPR003441NAC domain
PROSITE profilePS5100540.53615210IPR003441NAC domain
PfamPF023653.9E-2017143IPR003441NAC domain
SuperFamilySSF1019412.35E-39198210IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAASHPMISA APILLEPGFK FKPTDEDVVV HYLRPRAMNE PLPSGYIVDV DILNHNPWEL  60
VPEGSVEKYY FSRMVTRWPL GNWRKRAAGD GHWKASGKDV PIFSKGINGR VPLMVGLKKT  120
MVFYRGKAPF GENTEWVMEE YRLAEAGLKP SHVMRPREGG NFECACTARA IAKKNGELSE  180
ALRNTIASLK KVPVMVNPDD SWVVCHLYKK KKKCAMPRLI AQSYNVAGGG QVPFFDFIGQ  240
GNPERAASSS SLTGAPSEEN DDTDGSTSGE GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-2991439140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG227200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828753.11e-174NAC transcription factor NAM-B1-like
TrEMBLA0A2S3IED01e-173A0A2S3IED0_9POAL; Uncharacterized protein
STRINGPavir.Ha00546.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-36NAC domain containing protein 47