PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG194300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 311aa    MW: 32524.9 Da    PI: 8.9002
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG194300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.11.8e-32131186359
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          +vrY+eClkNhAa++Gg+a+DGCgEfmps g+eg+ +alkC+ACgCHRnFHR+e+++
  Pavir.8NG194300.1.p 131 AVRYRECLKNHAAAIGGNATDGCGEFMPS-GKEGSLEALKCSACGCHRNFHRKESDD 186
                          79**************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.8E-29132184IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.2E-30133183IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-24133185IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.383134183IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.5E-28187253IPR009057Homeodomain-like
SuperFamilySSF466895.98E-19190251IPR009057Homeodomain-like
TIGRFAMsTIGR015657.1E-27194250IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVSIVPLQRR TEASAAAAAA ARSIFSLERR RRDEEGSGGG MDLSGTQGEL AIPMHANVVS  60
PYGGGGGGGG GVGGGRAAGG HVLQLHHEHH GNNNGQSPVL PPSPPAAAAE VMESSAKKRG  120
PAAGAGIGSA AVRYRECLKN HAAAIGGNAT DGCGEFMPSG KEGSLEALKC SACGCHRNFH  180
RKESDDDDDD IYAKRFRTKF TPEQKARMLE FAERVGWRLQ KLDDVMVQAF CQEIGVKRRV  240
LKVWMHNNKQ NLATKRLEAS PQEPPAMASP PAPPLMPLQM MPAAMMPPAA GPSGCHRGGP  300
GSPPPPPKLE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-241942511875ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG194300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9668554e-98EU966855.1 Zea mays clone 297761 mRNA sequence.
GenBankKJ7280454e-98KJ728045.1 Zea mays clone pUT6191 ZF-HD transcription factor (ZHD1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661088.12e-74zinc-finger homeodomain protein 4-like isoform X1
SwissprotQ2QW445e-57ZHD3_ORYSJ; Zinc-finger homeodomain protein 3
TrEMBLA0A3L6F8332e-75A0A3L6F833_MAIZE; Zinc-finger homeodomain protein 4
STRINGPavir.Ha01060.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-53homeobox protein 22