PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG158200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 125aa    MW: 13916.6 Da    PI: 8.4574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG158200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.72.5e-12242451
                  AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                         +GV++  k+ +W A I++      +k+++lg+ gt++eAa+++++a+ 
  Pavir.8NG158200.1.p  2 RGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTPDEAARLYDRAAF 42
                         9**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-6244IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-8245IPR016177DNA-binding domain
SMARTSM003802.5E-4257IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-6347IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MRGVYFKNMK WQAAIKVDKK QIHLGTVGTP DEAARLYDRA AFMCGREPNF ELSEEEKQEL  60
RKYTWEDFLA VTRNTITSKK QRKVGLLRRS KADLFMGQSD GDTEMANGGG SSNSDNGDAE  120
TSAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.140070.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG158200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0648791e-120BT064879.1 Zea mays full-length cDNA clone ZM_BFb0311A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952530.13e-86ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP93e-40ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A2T7F6753e-85A0A2T7F675_9POAL; Uncharacterized protein
TrEMBLA0A2T7F6833e-85A0A2T7F683_9POAL; Uncharacterized protein
STRINGPavir.Aa01947.1.p3e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.21e-42ERF family protein