PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG149600.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 225aa    MW: 25310.1 Da    PI: 8.8328
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG149600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.42.6e-2243103258
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 
                          dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H++
  Pavir.8NG149600.4.p  43 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTTDPPLFSVTYFNHHTC 103
                          8***************************99999*******876168*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-2332103IPR003657WRKY domain
SuperFamilySSF1182905.36E-2235103IPR003657WRKY domain
PROSITE profilePS5081115.84737101IPR003657WRKY domain
SMARTSM007745.9E-3342105IPR003657WRKY domain
PfamPF031066.3E-2543103IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MALDSVPTYL SDLGSSHRAV RTQQQRIRKD ERTWTSDTYA PYDDGHQWRK YGEKKLSNSN  60
FPRFYYRCTY KNDMKCPATK QVQQKDTTDP PLFSVTYFNH HTCITSSNPK GCTRDIAAQS  120
SSRKAVSICF SPHTASEQPT FLTSSAMPQS PNVHSFRANQ QPERSPYASQ FQWTDTSCPV  180
SNSQVQMEVD SFSAASTASS SSGALPRTLL PIGQSRCIEY FHFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-1543103968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.93260.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG149600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586290.0KU058629.1 UNVERIFIED: Panicum miliaceum WRKY20-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827915.11e-145probable WRKY transcription factor 46 isoform X1
TrEMBLA0A2T7E4I61e-146A0A2T7E4I6_9POAL; Uncharacterized protein
TrEMBLA0A3L6R8801e-146A0A3L6R880_PANMI; Putative WRKY transcription factor 48
STRINGPavir.J31578.1.p1e-167(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-20WRKY DNA-binding protein 55