PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG107600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 807aa    MW: 91088.1 Da    PI: 8.2246
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG107600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.21.2e-266257421128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lpp frFhPtdeel+ +yL++++         +i+evdiy++ePwdLp+++k ++ ewy  +  +k+ +   +++  ++sgyW atgk +
  Pavir.8NG107600.2.p 625 LPPAFRFHPTDEELILHYLCNRA---------TIPEVDIYNMEPWDLPARAKFGDCEWYLSCFPKKEWHIFCHRKYPISSGYWMATGKAR 705
                          79*****************9864.........4899************99999999***999988887765555556899********** PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++ +   g+  g k+ Lvf+     +g+ t Wvmhey+l
  Pavir.8NG107600.2.p 706 RLTLSgaAGKMLGSKRRLVFH---LLSGKMTGWVMHEYHL 742
                          **998778889**********...677889********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078872.6E-17123275IPR012416CALMODULIN-BINDING PROTEIN60
PfamPF078875.4E-37475622IPR012416CALMODULIN-BINDING PROTEIN60
SuperFamilySSF1019411.29E-38622776IPR003441NAC domain
PROSITE profilePS5100531.011625776IPR003441NAC domain
PfamPF023658.7E-19626742IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MGSKRKPRRG HNSSSSPVSS SDEISTTEET TPRRRSSDAL AEAGRRRNTR KREDKVIWML  60
EWIKEGTKKL TEDTSKMQKQ LNKLTESHNE LRKQLELHIN GSSGDDSSAP RSETKHAQQP  120
PKYRLEFTCE VNDEIEKGQI IETKNNGKTI SVVLYDDHNQ IVATGPFASA SVMLVVVNGE  180
FNQHGNQYTW SRKDFERNIK RPRQGNSVME DEHHPVESIV SNCVFKLDGG VKGHSDATIL  240
YNSSNKKVRL GVMVLSPTDE RVLEGLSNLF FVRGHDRPAR QCNPHNSGLK RLRCNPAAGT  300
LLFPGNTFTE TSASIPQHQF SHLGTTNIGI APATYNLPAG NEQLLLSGGN FAHPDLVSHD  360
YSTGSENFPN ATKGTHFNMD QIALPVQLRW DVPNVESTKR WSLLDQLMPL YSCAQKYTNY  420
DSPTMGIMPE LYVSLAIIPK QVTQSRRKRG VLIELHELED SDEKRPRKRQ SHTKYRLRFV  480
NKVNEAYYTM NPIKADDGSH LKVALFDEND MKVTFGPLSS ASVEVVALHG DFNVNGQDYW  540
TSEEFSHCVV CPWHRKEASV LGGDRILVLA EGEACLGNAF FQVTSFLART GKFKMGVMLA  600
SVQEERIQEG MSEPLLVQDR QLEGLPPAFR FHPTDEELIL HYLCNRATIP EVDIYNMEPW  660
DLPARAKFGD CEWYLSCFPK KEWHIFCHRK YPISSGYWMA TGKARRLTLS GAAGKMLGSK  720
RRLVFHLLSG KMTGWVMHEY HLPDNNTLRS IISSTTASSS TSSTRDEWVL CRIFKKTDLL  780
QPSPFLDDDA PVSPLRDCRL QAFLSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-2862578117170NO APICAL MERISTEM PROTEIN
1ut4_B6e-2862578117170NO APICAL MERISTEM PROTEIN
1ut7_A6e-2862578117170NO APICAL MERISTEM PROTEIN
1ut7_B6e-2862578117170NO APICAL MERISTEM PROTEIN
3swm_A6e-2862577620168NAC domain-containing protein 19
3swm_B6e-2862577620168NAC domain-containing protein 19
3swm_C6e-2862577620168NAC domain-containing protein 19
3swm_D6e-2862577620168NAC domain-containing protein 19
3swp_A6e-2862577620168NAC domain-containing protein 19
3swp_B6e-2862577620168NAC domain-containing protein 19
3swp_C6e-2862577620168NAC domain-containing protein 19
3swp_D6e-2862577620168NAC domain-containing protein 19
4dul_A6e-2862578117170NAC domain-containing protein 19
4dul_B6e-2862578117170NAC domain-containing protein 19
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.440970.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG107600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694641.10.0PREDICTED: uncharacterized protein LOC107304550
TrEMBLA0A368SCE21e-150A0A368SCE2_SETIT; Uncharacterized protein
STRINGPavir.Ha00781.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-31NAC family protein