PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG084100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 461aa    MW: 48081.6 Da    PI: 8.2161
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG084100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17359391133
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                          Cs+C++ +Tp+WR gpdg+ tLCnaCG++y+ +
  Pavir.8NG084100.1.p 359 CSHCHSPDTPQWRAGPDGPGTLCNACGIRYAAN 391
                          ******************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-16353407IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.596353391IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.52E-14355416No hitNo description
Gene3DG3DSA:3.30.50.104.5E-14357393IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.70E-14358414No hitNo description
PfamPF003201.9E-15359392IPR000679Zinc finger, GATA-type
PROSITE patternPS003440359384IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MRTRFHLSLL DVPEDLPDCD GGCFRPGGGL CCPDDPLDLV LQFFSTPSPQ EASLEALGIR  60
GSPRRQEQPP PLPGWAQENG FGGVRLLGGG GCGEPESSRA PEDAVPVDVG KYLVSVPPDG  120
GGEAAVCNPA RDTGGVPAAV PAGGVRACGA LGGVVPNGAP PLLPPVSARA LHLQHTFRAF  180
DGGVVSDVAP PLLALMPAGG VPPHSCGAPV GVASDVALPV PAGALVHACR ALVGGAVSND  240
AAPSWALAPP SPWALPASRA FSGCLTPTTS ETSSPAPVWR PLAWVVPRKR RRSPVQRRKR  300
PWCLEFPLHA LPAAPPDNPG DNNGDEEAKN SCDNAGGGGG IRRRRPVPRQ RNRQAQRVCS  360
HCHSPDTPQW RAGPDGPGTL CNACGIRYAA NKLLPEYRPS TAPSFRSDQH SNRHRKVVKL  420
REQKAKETMK AMPADPLPVP SPSPPKSDEF MDVCTYISTG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287291RKRRR
2287292RKRRRS
3287300RKRRRSPVQRRKRP
4288299KRRRSPVQRRKR
5342349RRRPVPRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG084100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432160.0AC243216.1 Panicum virgatum clone PV_ABa003-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804973.17e-54uncharacterized protein LOC112883918
TrEMBLA0A2T7CKY50.0A0A2T7CKY5_9POAL; Uncharacterized protein
STRINGPavir.Ha01602.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16076913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-25GATA transcription factor 4