PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG050000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 665aa    MW: 68921.5 Da    PI: 6.6687
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG050000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-093634001954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Pavir.8NG050000.2.p 363 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 400
                          554459******************************88 PP
2BELL116.11.7e-37223294172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqelq+kk+kL+++l+eV++rY+qy+ q+q+v ssFea+ag gsa+ Yt+lAl++iSr+FrcL+daia q+
  Pavir.8NG050000.2.p 223 ERQELQMKKSKLINMLDEVEQRYRQYHGQMQAVSSSFEAAAGAGSARTYTALALRTISRQFRCLRDAIAAQV 294
                          79*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.0E-60149292IPR006563POX domain
PfamPF075265.8E-49154291IPR006563POX domain
PROSITE profilePS5007112.001341404IPR001356Homeobox domain
SMARTSM003892.4E-9344408IPR001356Homeobox domain
CDDcd000865.05E-13344405No hitNo description
SuperFamilySSF466893.94E-17346411IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28347410IPR009057Homeodomain-like
PfamPF059202.6E-18361400IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MAAYYHGGAG TDIQASADGL QTLYLMNPGY ASYGGDAGAS PPGATNMMLL NSAVSTMTPA  60
SFGHHHQSPS AAQQHFVGIP LQAPPSGYNL WTPATSGAAD MSPPQAQTPG AAAGVSAVLS  120
LSSREAPPVT VAAVGGADEG KYQLGPSATP QGQMVMSSKY LKAAQQLLDE VVSVSKGVED  180
AKALTKSLAA VKKKEDSEGV SGGGTDDGGA KSGGPVPELS TAERQELQMK KSKLINMLDE  240
VEQRYRQYHG QMQAVSSSFE AAAGAGSART YTALALRTIS RQFRCLRDAI AAQVRAASRA  300
LGEDADAAVA GGGRTVGSRL RFIDHQLRQQ RALQQLGMMQ GGAWRPQRGL PERSVSILRS  360
WLFEHFLHPY PKDSDKIMLA KQTGLTRSQV SNWFINARVR LWKPMVEEMY LEETKDQDGG  420
GGNDEGKSGG GTKSGDTNNG VDSVTPRSDG AMSKAAAARV AVVAAEGAPP AKGVGGIHGS  480
TLLELAGDQQ TAHAGFYEGD GDDDDDVERR LKKARGDQPA PGAFHSHHVH DMAALHAQAA  540
AAARQQHEEV SHRELLMKFM ESGGGGAGAG ARDHHQDGGG YSLFAPGPYG QFGSEPFAFA  600
GNGGVSLTLG LPHGAGGGAE QTASFLMGSS TAGDSGSHGG AGGYDMNMQS TKSFAAQLMR  660
DFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A7e-17350408563Homeobox protein Meis2
4xrm_B7e-17350408563Homeobox protein Meis2
5bng_A6e-17350408159Homeobox protein Meis2
5bng_B6e-17350408159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.170780.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG050000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0860920.0BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827941.10.0BEL1-like homeodomain protein 1
RefseqXP_025827942.10.0BEL1-like homeodomain protein 1
RefseqXP_025827943.10.0BEL1-like homeodomain protein 1
RefseqXP_025827944.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-108BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2S3ICH10.0A0A2S3ICH1_9POAL; Uncharacterized protein
STRINGPavir.Ha01822.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.32e-65BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]