PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.8NG050000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 665aa MW: 68921.5 Da PI: 6.6687 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.8 | 2.1e-09 | 363 | 400 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Pavir.8NG050000.1.p 363 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 400 554459******************************88 PP | |||||||
2 | BELL | 116.1 | 1.7e-37 | 223 | 294 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kL+++l+eV++rY+qy+ q+q+v ssFea+ag gsa+ Yt+lAl++iSr+FrcL+daia q+ Pavir.8NG050000.1.p 223 ERQELQMKKSKLINMLDEVEQRYRQYHGQMQAVSSSFEAAAGAGSARTYTALALRTISRQFRCLRDAIAAQV 294 79*******************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.0E-60 | 149 | 292 | IPR006563 | POX domain |
Pfam | PF07526 | 5.8E-49 | 154 | 291 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.001 | 341 | 404 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-9 | 344 | 408 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.05E-13 | 344 | 405 | No hit | No description |
SuperFamily | SSF46689 | 3.94E-17 | 346 | 411 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 347 | 410 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-18 | 361 | 400 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 665 aa Download sequence Send to blast |
MAAYYHGGAG TDIQASADGL QTLYLMNPGY ASYGGDAGAS PPGATNMMLL NSAVSTMTPA 60 SFGHHHQSPS AAQQHFVGIP LQAPPSGYNL WTPATSGAAD MSPPQAQTPG AAAGVSAVLS 120 LSSREAPPVT VAAVGGADEG KYQLGPSATP QGQMVMSSKY LKAAQQLLDE VVSVSKGVED 180 AKALTKSLAA VKKKEDSEGV SGGGTDDGGA KSGGPVPELS TAERQELQMK KSKLINMLDE 240 VEQRYRQYHG QMQAVSSSFE AAAGAGSART YTALALRTIS RQFRCLRDAI AAQVRAASRA 300 LGEDADAAVA GGGRTVGSRL RFIDHQLRQQ RALQQLGMMQ GGAWRPQRGL PERSVSILRS 360 WLFEHFLHPY PKDSDKIMLA KQTGLTRSQV SNWFINARVR LWKPMVEEMY LEETKDQDGG 420 GGNDEGKSGG GTKSGDTNNG VDSVTPRSDG AMSKAAAARV AVVAAEGAPP AKGVGGIHGS 480 TLLELAGDQQ TAHAGFYEGD GDDDDDVERR LKKARGDQPA PGAFHSHHVH DMAALHAQAA 540 AAARQQHEEV SHRELLMKFM ESGGGGAGAG ARDHHQDGGG YSLFAPGPYG QFGSEPFAFA 600 GNGGVSLTLG LPHGAGGGAE QTASFLMGSS TAGDSGSHGG AGGYDMNMQS TKSFAAQLMR 660 DFVA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 7e-17 | 350 | 408 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 7e-17 | 350 | 408 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 6e-17 | 350 | 408 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 6e-17 | 350 | 408 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.17078 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.8NG050000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT086092 | 0.0 | BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827941.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_025827942.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_025827943.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_025827944.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-108 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A2S3ICH1 | 0.0 | A0A2S3ICH1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha01822.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4816 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35940.3 | 2e-65 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.8NG050000.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|