PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG045400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 437aa MW: 50171.9 Da PI: 6.8497

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG045400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.4	4.6e-24	117	213	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt+ +v++Li+a+++++++ + + +kk++W+++sk+m er +++sp+qC++k+++lnkryk+++++ +++ +++++ + Pavir.8NG045400.1.p 117 KWTDTMVKLLITAVSYIGDDHGPDLgggrrnftimQKKGKWKAISKVMGERECHVSPQQCEDKFNDLNKRYKRLTDILGRGiACNVVANP 206 7************99999997533445667777******************************************88**999 PP trihelix 80 pyfdqle 86 ++d+++ Pavir.8NG045400.1.p 207 TLLDSMN 213 9999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-18	115	239	No hit	No description
CDD	cd14686	0.00146	387	425	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MEGNNVPPES MMQGAPYGSL DLHGNSMQTH APNSGKQIFN NSQMPGTFTM TTNRATEPVD 60 FPGFQFKEHG KCDKHHHHNS QHSMNSMSDD EEHDMTEDAT YTPSSNGKKG SPWHRVKWTD 120 TMVKLLITAV SYIGDDHGPD LGGGRRNFTI MQKKGKWKAI SKVMGERECH VSPQQCEDKF 180 NDLNKRYKRL TDILGRGIAC NVVANPTLLD SMNHLSDKKK EDAKKILSSK HLFYEQMCSY 240 HNNNRVKLPE DHALQHSLLL ALGSKDEHDP RRDTSGNDDE DDQSVDFDYE ENDEEQHHVH 300 SNMREPSTHK RPRHGDAALV TSSSHKGSET SSPHAIKVDI NKAFADGTNW SLMRQDLASQ 360 TLEIQKRLLQ IEEKDLELKK HRLRWDRYRK KKDREIERME MENEQMMIEN KRLENELRQK 420 ALELELKLKG QENNNA*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MEGNNVPPES MMQGAPYGSL DLHGNSMQTH APNSGKQIFN NSQMPGTFTM TTNRATEPVD  60
FPGFQFKEHG KCDKHHHHNS QHSMNSMSDD EEHDMTEDAT YTPSSNGKKG SPWHRVKWTD  120
TMVKLLITAV SYIGDDHGPD LGGGRRNFTI MQKKGKWKAI SKVMGERECH VSPQQCEDKF  180
NDLNKRYKRL TDILGRGIAC NVVANPTLLD SMNHLSDKKK EDAKKILSSK HLFYEQMCSY  240
HNNNRVKLPE DHALQHSLLL ALGSKDEHDP RRDTSGNDDE DDQSVDFDYE ENDEEQHHVH  300
SNMREPSTHK RPRHGDAALV TSSSHKGSET SSPHAIKVDI NKAFADGTNW SLMRQDLASQ  360
TLEIQKRLLQ IEEKDLELKK HRLRWDRYRK KKDREIERME MENEQMMIEN KRLENELRQK  420
ALELELKLKG QENNNA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	379	390	KHRLRWDRYRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.21151	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG045400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826713.1	0.0	uncharacterized protein LOC112902031
TrEMBL	A0A2T7CK81	0.0	A0A2T7CK81_9POAL; Uncharacterized protein
STRING	Pavir.Ha01834.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	5e-91	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Pavir.8NG045400.1.p