PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG040400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 115aa MW: 13198.2 Da PI: 9.8532 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 73.7 | 4.1e-23 | 24 | 112 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 f+ +Y+ + GF+vrk++s+k+k +g+i + +fvC +eg++ ++k++ + + +raetrt+C+ ++ + +++ +g+++vt+l leHnH+l+ Pavir.8NG040400.1.p 24 FWVSYGGQKGFEVRKRYSNKRKSDGKIRSCRFVCANEGHKMNDKRD-HLIKCPRAETRTDCQVRMGLILDRkKGNYKVTELILEHNHALQ 112 9*****************************************9999.999***************9998888***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-18 | 24 | 112 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MDFPPSFLPQ IGMEFSSSDE AGMFWVSYGG QKGFEVRKRY SNKRKSDGKI RSCRFVCANE 60 GHKMNDKRDH LIKCPRAETR TDCQVRMGLI LDRKKGNYKV TELILEHNHA LQLS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG040400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876513.1 | 8e-62 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | A0A0N7KS91 | 3e-63 | A0A0N7KS91_ORYSJ; Os10g0571900 protein (Fragment) | ||||
TrEMBL | Q7G1M5 | 4e-61 | Q7G1M5_ORYSJ; Transposon protein, putative, unclassified, expressed | ||||
TrEMBL | Q8S7N0 | 4e-61 | Q8S7N0_ORYSJ; Putative transposase | ||||
STRING | OS10T0571900-00 | 5e-64 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-15 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG040400.1.p |