PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG024800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 330aa MW: 35932.5 Da PI: 4.7551 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.6 | 5.1e-19 | 15 | 141 | 1 | 126 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknratk.sg 81 +pp++rF Pt el+ +yL++ v++ e e v+ +d+y+++P +L + ++ +++ +wyf + ++ k + g+r +ra++ g Pavir.8NG024800.1.p 15 VPPCYRFTPTAPELIRCYLNPWVANPGqtplGEPEGVVCAADVYSADPGTLASrlrRFGHDDGNWYFLCVARWKDGNaGTRMTRAVRgGG 104 599********************987765542223579999**********853446666777******9999988669*****666489 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126 +W+ +gk +v + g ++t+ + + g k+ W+m+e+ Pavir.8NG024800.1.p 105 TWHGSGKRIAVRH-----HGYRQTFEYR---DAAGGKSAWLMEEF 141 9**9999877776.....79******96...67788********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-23 | 7 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.485 | 15 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-14 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MEQQGGMEQA RWPDVPPCYR FTPTAPELIR CYLNPWVANP GQTPLGEPEG VVCAADVYSA 60 DPGTLASRLR RFGHDDGNWY FLCVARWKDG NAGTRMTRAV RGGGTWHGSG KRIAVRHHGY 120 RQTFEYRDAA GGKSAWLMEE FGTSMPEATD GEGVRVICRV HRTPRAAAGG GGGEEHQEET 180 DEVQFRSSKR QRGTLNHEHD FAATGYWTTA APPDAGCSYA STSQTTPVNN GAVSTSTWQL 240 QPMMEQGVGY HPTGINGGED IKGEPEPEPL EMLPADMGWQ QFAEMGYGFG YAAEDARMNE 300 WMRSTFSCPQ PADGAAQEGD DPRDETGAS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG024800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826981.1 | 0.0 | NAC domain-containing protein 30-like | ||||
TrEMBL | A0A2T7E4Y7 | 0.0 | A0A2T7E4Y7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha01862.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11474 | 18 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46590.1 | 1e-12 | NAC domain containing protein 96 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG024800.1.p |