PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG018400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 387aa MW: 41963.9 Da PI: 8.4061 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.8 | 2.1e-53 | 16 | 149 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdee+++ yL +k + +++ ++i evd++k+ePwdLp+k+k +ekewyfF+++d ky+tg r+nratk+gyWkatgkd+ Pavir.8NG018400.1.p 16 LPPGFRFHPTDEEVITSYLLQKFLNPSFDP-RAIGEVDLNKCEPWDLPSKAKMGEKEWYFFCHKDMKYPTGMRTNRATKDGYWKATGKDR 104 79*************************999.88***************99999************************************* PP NAM 91 evlsk......kgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ ++elvg+kktLvfy grap+g+kt+Wvmhe+rle Pavir.8NG018400.1.p 105 EIFKPaaaggaGRELVGMKKTLVFYMGRAPRGSKTNWVMHEFRLE 149 ****99998888888***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-61 | 12 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.506 | 16 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-27 | 17 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MVERSVKSEQ GGDLFLPPGF RFHPTDEEVI TSYLLQKFLN PSFDPRAIGE VDLNKCEPWD 60 LPSKAKMGEK EWYFFCHKDM KYPTGMRTNR ATKDGYWKAT GKDREIFKPA AAGGAGRELV 120 GMKKTLVFYM GRAPRGSKTN WVMHEFRLEG KSRHNNVNLR FNPKDEWVVC KVHHKNGEAS 180 IKKPAEEYSS GTPNVSSVVS DDAGEGGDDQ FLDSSMINPM YFNSAASLPS TTMTINAAPL 240 HNADYSSIFS TAAGATTTTR SSFVDLPNYG LNDVASYNLQ QQVAVANSAA STNNSGSYSS 300 LWNMLINADH NQAMGSYNLH PQAIVAKALG GNYFAGGLPS SSVTGILQHN SQGVPQQKLG 360 NNYGDSSTAA IGPAATKNLG APSGRY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-51 | 14 | 180 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-51 | 14 | 180 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-51 | 14 | 180 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-51 | 14 | 180 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-51 | 14 | 180 | 15 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-51 | 14 | 180 | 15 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.26229 | 0.0 | callus| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Predominantly expressed in developing vascular tissue of the leaves and roots, and in developing flowers. {ECO:0000269|PubMed:15654622}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem. {ECO:0000269|PubMed:15654622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG018400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808112.1 | 0.0 | NAC domain-containing protein 45-like | ||||
Swissprot | Q5CD17 | 1e-111 | NAC77_ORYSJ; NAC domain-containing protein 77 | ||||
TrEMBL | A0A3L6PH65 | 0.0 | A0A3L6PH65_PANMI; NAC domain-containing protein 77-like | ||||
STRING | Pavir.J39049.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5120 | 30 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 6e-82 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG018400.1.p |