PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG384700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 192aa MW: 21544.3 Da PI: 9.8725 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.8 | 1.2e-13 | 110 | 154 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++d+ +qlG+g+W+ ++ + ++Rt+ q+ s+ q y Pavir.8KG384700.1.p 110 PWTEEEHRKFLDGLRQLGKGDWRGMSKSFVTTRTATQVASHAQRY 154 7*****************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.697 | 103 | 159 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.58E-16 | 104 | 159 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-15 | 106 | 158 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.8E-8 | 107 | 157 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-10 | 108 | 150 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.2E-11 | 110 | 154 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.85E-9 | 110 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEEKGGQGEP LLPTTSRISE SFHQLAEFWQ TRRPKPATVV LRLFGMDVVA DEEPDDNDIG 60 FELRKSSSMQ NLTIPSADPL LPRGEAGEGK VYASNDLELA SRQQRKKGIP WTEEEHRKFL 120 DGLRQLGKGD WRGMSKSFVT TRTATQVASH AQRYSLRQTN PGKKKRRASL FVVGIADFSD 180 DQVSTLMPFH R* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 166 | KKKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.26848 | 1e-112 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed mainly in roots, leaves, and senescent leaves at similar levels. {ECO:0000269|PubMed:12172034}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}. | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG384700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251610 | 1e-84 | AK251610.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129a20, mRNA sequence. | |||
GenBank | AK362457 | 1e-84 | AK362457.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2005J10. | |||
GenBank | AK370274 | 1e-84 | AK370274.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2108A12. | |||
GenBank | AK373165 | 1e-84 | AK373165.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022M03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795278.1 | 1e-84 | transcription factor MYBS2-like | ||||
Swissprot | B8BI93 | 7e-48 | MYBS2_ORYSI; Transcription factor MYBS2 | ||||
Swissprot | Q7XC51 | 7e-48 | MYBS2_ORYSJ; Transcription factor MYBS2 | ||||
TrEMBL | A0A3L6SAI0 | 2e-84 | A0A3L6SAI0_PANMI; Protein REVEILLE 2-like | ||||
STRING | Pavir.Ib02262.1.p | 3e-90 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10464 | 30 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 1e-33 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG384700.1.p |
Publications ? help Back to Top | |||
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