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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.8KG337100.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
GRAS |
| Protein Properties |
Length: 420aa MW: 47733.7 Da PI: 8.8866 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.8KG337100.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 295.4 | 1.5e-90 | 61 | 418 | 3 | 360 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
+lL++cA+av+++++ +a++lL +++++as +gd++qR+a +ft++L+arl++ +s+l + l +++ s +e l+a++l++ v+ + k
Pavir.8KG337100.1.p 61 TLLISCAQAVATNNHMRARELLMEIKQHASATGDATQRVALCFTKGLEARLVGAGSQLWQLLMAEHPS---IVEFLKAYRLYYAVCCFKK 147
79*********************************************************999999998...9****************** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv.pfefn 179
++ +Il+a+ g++++Hi+D+++ G+QW+ Ll+ La R++gpp+++iT++g+++ + +e++ee+g rL++ A+e+g+ +f+f+
Pavir.8KG337100.1.p 148 VALSFSTMTILQAMVGKRKLHIVDYGMHFGFQWAGLLRLLAGREGGPPEVKITAIGPAKLKacPAERIEELGCRLSNWANEFGLaSFKFH 237
*********************************************************888899********************957**** PP
GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
+ ++k++ed+++e+L+++++E+++Vn ++ +l+desv + +rd+vL+ +k+++P+v++ + ++++ ++sF++rf e ++yy+al
Pavir.8KG337100.1.p 238 T-IMKKWEDVRIEDLNTNTDEVIVVNDLFSFSTLMDESVFFDRqsPRDTVLSNIKKMRPDVFIQSILNCSC-GSSFVARFREVMSYYMAL 325
*.7***********************************96554449*************************.679*************** PP
GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
fd l+a++pres+ r+++E+++lgr + n++aceg + +r e++++W+ r ++aG++ +pl++++++ +k ++k++ + + + e+ ++
Pavir.8KG337100.1.p 326 FDILDATMPRESKSRVVLEQFVLGRPALNIIACEGLDLAQRPEKYRQWQVRNQRAGLRLLPLKSRIVEVVKDAVQKHHHKNFLICEDGHW 415
******************************************************************************999*99999999 PP
GRAS 358 lvl 360
l++
Pavir.8KG337100.1.p 416 LLQ 418
875 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 420 aa
Download sequence Send
to blast |
MIKDPEENCA NEMLDEMILH AYDTCIKGMR KLHVSMDTKV DKGNRKKYNK AAKNNMVDIH 60
TLLISCAQAV ATNNHMRARE LLMEIKQHAS ATGDATQRVA LCFTKGLEAR LVGAGSQLWQ 120
LLMAEHPSIV EFLKAYRLYY AVCCFKKVAL SFSTMTILQA MVGKRKLHIV DYGMHFGFQW 180
AGLLRLLAGR EGGPPEVKIT AIGPAKLKAC PAERIEELGC RLSNWANEFG LASFKFHTIM 240
KKWEDVRIED LNTNTDEVIV VNDLFSFSTL MDESVFFDRQ SPRDTVLSNI KKMRPDVFIQ 300
SILNCSCGSS FVARFREVMS YYMALFDILD ATMPRESKSR VVLEQFVLGR PALNIIACEG 360
LDLAQRPEKY RQWQVRNQRA GLRLLPLKSR IVEVVKDAVQ KHHHKNFLIC EDGHWLLQG*
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