PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG311400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 264aa    MW: 27857.7 Da    PI: 10.5418
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG311400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF382.1e-124885340
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                         i nk  r  tf +R  g++KK +E+  LC+a+++v+++
  Pavir.8KG311400.1.p 48 ITNKLSRRATFKRRCRGLMKKTSEIAALCGARACVVVY 85
                         89**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-1038100IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-163890IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.9933885IPR002100Transcription factor, MADS-box
CDDcd002662.70E-163986No hitNo description
PRINTSPR004045.5E-64060IPR002100Transcription factor, MADS-box
PfamPF003194.0E-134886IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-66075IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MIWGSSSIAP LYKHTSSSLD RLTSPISTYR SYLATAAMAR QKVNLQYITN KLSRRATFKR  60
RCRGLMKKTS EIAALCGARA CVVVYDAGAG AAAPPEAWPS AAEAARLFRK YRGMPEGSSL  120
KKATGQLQHL AARFARVRGQ VKRSEVENGE RDAAALLHER MAGRRRSLAG ATGKELAAVK  180
DLVERRLREA KERLRQLGAG EDAVVHPAVA VAPAAAPFGG ELGAVFYGAS GGSDGAGPSG  240
SGSAAAMEAF NQGCDLGFSW SEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG311400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791211.11e-122agamous-like MADS-box protein AGL80
TrEMBLA0A2T8I9X83e-94A0A2T8I9X8_9POAL; Uncharacterized protein
STRINGPavir.Hb00476.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2764333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.32e-13M-type_MADS family protein