PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG269000.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRF

Protein Properties

Length: 313aa MW: 34530.7 Da PI: 7.6446

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG269000.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	69.2	5.4e-22	71	114	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++r+++rsrk++e+ Pavir.8KG269000.3.p 71 VEPGRCRRTDGKKWRCSRDAIGDQKYCERHIKRNCHRSRKHVES 114 59***************************************996 PP
2	QLQ	57.4	4.5e-20	10	46	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++a n+PvP+ Ll++i++ Pavir.8KG269000.3.p 10 GPFTPTQWMELEHQALIYKHFAVNAPVPSSLLLPIKR 46 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.8E-12	10	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	9.8E-14	11	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.308	11	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	22.893	70	114	IPR014977	WRC domain
Pfam	PF08879	2.3E-17	72	113	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MQGVLSRVRG PFTPTQWMEL EHQALIYKHF AVNAPVPSSL LLPIKRSINP WSGLGSSSLG 60 WTVFPPGSGD VEPGRCRRTD GKKWRCSRDA IGDQKYCERH IKRNCHRSRK HVESRKATPT 120 IAEPSLAVSG GPSLPSYAVP WQQQVKSSAA NVTDPFSRES NRKLLEKQNV HSQLSVSTPM 180 DSFNFSTSGS SQNRDIVALS PVEFQHDHDQ AYLVHGVGSS AENDNELQES LLLVSKETLD 240 DGPLGEVFKS KSCQSAYADI LTDQWTATRD MHSPTGILQL SNSNTMPLEN HINSNDYLMA 300 TMVNAQTVPT FL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7930	0.0	callus\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG269000.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827128.1	0.0	growth-regulating factor 8-like isoform X1
Swissprot	Q6AWY1	1e-142	GRF8_ORYSJ; Growth-regulating factor 8
TrEMBL	A0A2S3IEP9	0.0	A0A2S3IEP9_9POAL; Uncharacterized protein
STRING	Pavir.Hb00712.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-42	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Pavir.8KG269000.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]