PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG269000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRF
Protein Properties Length: 311aa    MW: 33255.2 Da    PI: 8.4956
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG269000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC69.25.3e-22131174245
                  WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                           epgrCrRtDGKkWRCsr++++++k+CErH++r+++rsrk++e+
  Pavir.8KG269000.2.p 131 VEPGRCRRTDGKKWRCSRDAIGDQKYCERHIKRNCHRSRKHVES 174
                          59***************************************996 PP
2QLQ57.44.5e-2070106137
                  QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          ++FT++Q+++L++Q+l+yK++a n+PvP+ Ll++i++
  Pavir.8KG269000.2.p  70 GPFTPTQWMELEHQALIYKHFAVNAPVPSSLLLPIKR 106
                          59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-1270106IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.7E-1471104IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.30871106IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.893130174IPR014977WRC domain
PfamPF088792.3E-17132173IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
METSRDGFFG AAERASPPPP PPSCSFLGSA AAAAGSGGAR MLSFSSSGAA GLGLSSGASK  60
MQGVLSRVRG PFTPTQWMEL EHQALIYKHF AVNAPVPSSL LLPIKRSINP WSGLGSSSLG  120
WTVFPPGSGD VEPGRCRRTD GKKWRCSRDA IGDQKYCERH IKRNCHRSRK HVESRKATPT  180
IAEPSLAVSG GPSLPSYAVP WQQQVKSSAA NVTDPFSRES NRKLLEKQNV HSQLSVSTPM  240
DSFNFSTSGS SQNRDIVALS PVEFQHDHDQ AYLVHGVGSS AENDNELQES LLLVSKETLD  300
DGPLESVILV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.79300.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG269000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827128.10.0growth-regulating factor 8-like isoform X1
RefseqXP_025827130.10.0growth-regulating factor 8-like isoform X3
SwissprotQ6AWY11e-123GRF8_ORYSJ; Growth-regulating factor 8
TrEMBLA0A2S3IEP90.0A0A2S3IEP9_9POAL; Uncharacterized protein
TrEMBLA0A2T8I9L90.0A0A2T8I9L9_9POAL; Uncharacterized protein
STRINGPavir.Hb00712.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.13e-42growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]