PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG196000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 367aa    MW: 37999.2 Da    PI: 4.5277
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG196000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.7e-102472444
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrw 44
                         W t+E++ll++av+++G+ +W+++a +++         ++t+  c++r+
  Pavir.8KG196000.2.p 24 WGTWEELLLACAVRRHGTASWDSVAMEVQsrcpasaaARLTPTGCRLRF 72
                         *****************************66666666556666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00282078IPR001005SANT/Myb domain
SuperFamilySSF466896.51E-52161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-42460IPR009057Homeodomain-like
CDDcd001679.68E-52458No hitNo description
PfamPF002492.4E-92473IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MTARSDDPGV SPGTSAAAAG GEIWGTWEEL LLACAVRRHG TASWDSVAME VQSRCPASAA  60
ARLTPTGCRL RFRLLHRRFA AGAENGDGGA DADEDPDAAA ADGWVEELRK LRVAELRREV  120
ERYDLSIGSL QSKLKRLTEE RERSISGEAN PPAVKAEEDE EPAAGKGSRE DDAAGGESGR  180
SCRESNSSDL KRPVSDAGTA SAAGDGGAAA REEGEEEAAA AVGVSVDVKG EEVSGESVAG  240
SKEAEKESSD VQSSASPSRR REREGGGEGG EEEETEEASA SPSARPPLPA AESEALLAFL  300
ESVRTSKPGS VFKRRLESQS CRRRMCATPR EPSGGEHGHE GAAAAPSPGQ HDQVASAATL  360
PASAQP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312323KRRLESQSCRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.215331e-147root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG196000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820863.11e-120uncharacterized protein LOC112896947
TrEMBLA0A2S3I3Z61e-119A0A2S3I3Z6_9POAL; Uncharacterized protein
STRINGPavir.J33720.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.11e-15DNA-binding bromodomain-containing protein