PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG183400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 265aa MW: 28363.4 Da PI: 4.7749 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 132.8 | 2.5e-41 | 6 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppG+rF Pt+eel+++yL++k+++ + ++e+vi+ vd+y+v+Pw+Lp ++ + w++F++r++++a+g r++r+t sgyWk Pavir.8KG183400.1.p 6 LPPGYRFYPTEEELICFYLRNKLDSLRDDIERVIPVVDVYSVDPWQLPDihemlcGGAGAGEPWFYFCPRQEREARGGRPSRTTPSGYWK 95 79****************************99***************9545655422236679*************************** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 a g+ v+s+ +++++g+kkt+vfy+grap+g kt+ m+eyr+ Pavir.8KG183400.1.p 96 AAGTPGVVYSSaDRRAIGVKKTMVFYRGRAPSGAKTKYKMNEYRA 140 *********9978889***************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-46 | 3 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.225 | 6 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-22 | 7 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MAAAGLPPGY RFYPTEEELI CFYLRNKLDS LRDDIERVIP VVDVYSVDPW QLPDIHEMLC 60 GGAGAGEPWF YFCPRQEREA RGGRPSRTTP SGYWKAAGTP GVVYSSADRR AIGVKKTMVF 120 YRGRAPSGAK TKYKMNEYRA LQHYDAAPDA AAAAGADGSS SSARAAAPPP QLRSEFSLCR 180 LYTKSGTLRQ FDRRPLAAAA AGAAGEDPAG PSTAAAASPP EDDDGSGSST QQQQQQLAER 240 GADDDDPYGD DAAILDALLY WPGD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-31 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-31 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-31 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-31 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
4dul_A | 9e-31 | 1 | 142 | 12 | 144 | NAC domain-containing protein 19 |
4dul_B | 9e-31 | 1 | 142 | 12 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG183400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071274 | 1e-138 | AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818071.1 | 1e-151 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 2e-64 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A3L6RLX7 | 1e-152 | A0A3L6RLX7_PANMI; NAC domain-containing protein 90-like | ||||
STRING | Pavir.J02276.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-63 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG183400.1.p |
Publications ? help Back to Top | |||
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