PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG164700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 321aa MW: 34976.4 Da PI: 7.7318

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG164700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42	2.1e-13	164	217	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 k+ rr++ NRe+ArrsR+R++ ++ Le v +L++eN +L k++e ++ +++ Pavir.8KG164700.1.p 164 KKMRRMMLNRESARRSRKRRESRLRDLESQVSTLTSENASLLKRMEDMTHKYKD 217 899**************************************9988888777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-10	156	224	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.806	162	214	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-11	163	216	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.84E-10	164	215	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.9E-11	164	216	No hit	No description
Pfam	PF12498	2.4E-5	231	295	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MLPSRLHSPR LLRLPPVSTL RTYMVGERAG DVVHPRIAGS VNDDVVELLC GGGRGHPGAS 60 TAGLKRKLDL YFAAVAKSME AKSQESSFGY SDSLASGTSQ LTFQASFDVE QSGDGGGASL 120 VTNSNVIHTG HDDYQGKPTN SGTSKQQSDC GVNLDEKSDP AIAKKMRRMM LNRESARRSR 180 KRRESRLRDL ESQVSTLTSE NASLLKRMED MTHKYKDATL DNRNLIIAVE TMRTKMNMAE 240 KAVRTLSETT FLLPSTSELP PSLTLSSFAS DTASPDVANE YSMEHFLQST LHDDQNKPAL 300 SQMQQFPLTS GELGTMLVSL *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	183	RRSRKRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG164700.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963102.2	3e-98	light-inducible protein CPRF2 isoform X2
TrEMBL	A0A2T7EIZ5	5e-96	A0A2T7EIZ5_9POAL; Uncharacterized protein
TrEMBL	K3Z711	7e-96	K3Z711_SETIT; Uncharacterized protein
STRING	Pavir.Hb01299.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7595	29	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54620.1	5e-13	basic leucine zipper 25

Link Out ? help Back to Top
Phytozome	Pavir.8KG164700.1.p