PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG127300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 28283.8 Da PI: 8.2312 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.8 | 9.2e-36 | 17 | 144 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 p+Gf+F+Ptdee++ +yL++++ + +l+ ++i ++d+++++Pw+L ++++e yfFs+r k + g++ nra+ +g Wk++gkd + Pavir.8KG127300.1.p 17 PAGFKFRPTDEEVILHYLRPRAVNAPLPS-SFIVDADVLSHNPWELL---PEGSTEKYFFSQRVLKWPIGNQWNRAAGDGHWKTSGKDVS 102 89************************999.89**************4...457789********************************** PP NAM 92 vlsk.....kgel..vglkktLvfykgrapkgektdWvmheyrl 128 ++++ + +g kktLvfy+g++ ge+t+Wvm+ey+l Pavir.8KG127300.1.p 103 IFCRplnggE--PlmIGSKKTLVFYHGKSDFGENTEWVMQEYSL 144 ***9887444..255***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-39 | 13 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.816 | 16 | 207 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-21 | 17 | 144 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-39 | 195 | 207 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAFPQPAVSA ASIAHAPAGF KFRPTDEEVI LHYLRPRAVN APLPSSFIVD ADVLSHNPWE 60 LLPEGSTEKY FFSQRVLKWP IGNQWNRAAG DGHWKTSGKD VSIFCRPLNG GEPLMIGSKK 120 TLVFYHGKSD FGENTEWVMQ EYSLVGAGLT PYRVMRPGGS NHFGESSSAA AAITEKNGNQ 180 SGALNNAKVQ VLVNPDNSWV VCHIYKKKNH MPRVIAQVYN SAEGEQVPFY NFLEMGNSKE 240 ESSERTNVKA NSTGLGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-27 | 9 | 144 | 8 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG127300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828726.1 | 1e-112 | uncharacterized protein LOC112903717 | ||||
TrEMBL | A0A2T7CND4 | 1e-159 | A0A2T7CND4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Hb01386.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4482 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 8e-38 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG127300.1.p |